263510 TOPRIM_TopoIIB_SPO
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263510 chr_9 TOPRIM_TopoIIB_SPO 366578 368830 - TOPRIM_TopoIIB_SPO

Synonyms

NCBI ID Ensembl Genomes exon ID
7443515 Thaps263510.2, Thaps263510.3, Thaps263510.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0035

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0032
 0.47

Most Highly Correlated Transcripts

9115

DnaJ
0.8514

41655

Chloroa_b-bind
0.8476

11797

2A0121
0.8469

263776

IMPase
0.846

3570

PP2Cc
0.8441

25786

hypothetical protein
0.8437

10948

hypothetical protein
0.8432

30701

PRK05279
0.8399

4938

Methyltransf_6 superfamily
0.8389

42828

ISOPREN_C2_like superfamily
0.8359

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the... cl00718 152.409 5.39E-43 483 - 644 specific 173774
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 152.409 5.39E-43 483 - 644 superfamily 260587
TP6A_N superfamily Type IIB DNA topoisomerase; Type II DNA topoisomerases are ubiquitous enzymes that catalyse the ATP... - 62.5379 4.20E-12 381 - 442 superfamily 190973
TP6A_N superfamily Type IIB DNA topoisomerase; Type II DNA topoisomerases are ubiquitous enzymes that catalyse the ATP... - 62.5379 4.20E-12 381 - 442 superfamily 190973

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36531 PHATRDRAFT_36531 151415 156625 462990 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003918 GO:0005524 GO:0006259 GO:0006265 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003918

DNA topoisomerase type II (ATP-hydrolyzing) activity

Details: 
Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006259

DNA metabolic process

Details: 
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO Category: 
BP

GO:0006265

DNA topological change

Details: 
The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO Category: 
BP

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