264191 WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264191	chr_14	WD40 superfamily	675125	677568	-	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452712	Thaps264191.2, Thaps264191.1, Thaps264191.4, Thaps264191.5, Thaps264191.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0092

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0206	0.21	1.9 2900

Most Highly Correlated Transcripts

bd765 (bd765) NA 0.9791	bd1081 (bd1081) NA 0.9719	bd1173 (bd1173) S_TKc 0.9674	10133 hypothetical protein 0.9617	10295 hypothetical protein 0.9512	1054 hypothetical protein 0.9491
37127 GH31 superfamily 0.9488	bd886 (bd886) NA 0.9436	10641 hypothetical protein 0.9403	bd1214 (bd1214) KISc_C_terminal 0.9394

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	140.163	1.22E-37	220 - 518	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	137.913	1.16E-35	212 - 525	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12783	PHATRDRAFT_12783	179191	328470	417498	Not available	AT4G33270.1	Not available

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

Not available -

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