264440 PRK06370
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264440 chr_17 PRK06370 278548 280547 - PRK06370

Synonyms

NCBI ID Ensembl Genomes exon ID
7444202 Thaps264440.2, Thaps264440.3, Thaps264440.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0070

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0182
 0.48

Most Highly Correlated Transcripts

270222

0.9597

bd1765

(bd1765) NA
0.9201

9512

PTZ00168
0.8809

bd1160

(bd1160) Chloroa_b-bind superfamily
0.8797

bd1662

(bd1662) TIGR00367
0.8766

262977

NA
0.8746

40200

TRX_reduct
0.8711

16295

FBPase
0.8685

bd719

(bd719) NA
0.868

bd672

(bd672) NA
0.8676

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 96.4777 1.28E-23 467 - 581 superfamily 251571
Pyr_redox_dim superfamily Pyridine nucleotide-disulphide oxidoreductase, dimerization domain; This family includes both class... - 96.4777 1.28E-23 467 - 581 superfamily 251571
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 70.2799 9.96E-15 286 - 350 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 70.2799 9.96E-15 286 - 350 superfamily 249559
PRK06370 mercuric reductase; Validated - 406.125 1.63E-135 104 - 580 multi-dom 235787

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19949 PHATRDRAFT_19949 181069 245209 76106 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0050660 GO:0015036 GO:0005737 GO:0004148 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004148

dihydrolipoyl dehydrogenase activity

Details: 
Catalysis of the reaction: protein N6-(dihydrolipoyl)lysine + NAD+ = protein N6-(lipoyl)lysine + NADH + H+.
GO Category: 
MF

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