264786 (RPC6) RNA_pol_Rpc34 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264786 chr_22 (RPC6) RNA_pol_Rpc34 superfamily 319668 320896 + RNA_pol_Rpc34 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442810 Thaps264786.2, Thaps264786.1, Thaps264786.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Most Highly Correlated Transcripts

41780

S_TKc
0.9344

30701

PRK05279
0.9264

33995

DUF1077
0.919

39232

PP2Cc
0.917

38011

PKc_like superfamily
0.9103

4267

COG0790
0.9095

27688

Trp-synth-beta_II superfamily
0.9095

1684

Ion_trans_2
0.9071

38736

S_TKc
0.9066

3570

PP2Cc
0.9061

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpc34 superfamily RNA polymerase Rpc34 subunit; Subunit specific to RNA Pol III, the tRNA specific polymerase. The... - 157.904 4.94E-45 124 - 284 superfamily 261189

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34324 PHATRDRAFT_34324 161169 295172 205239 Cre07.g314950.t1.2 Not available 554736

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0005634 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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