268453 PRK11183Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268453	chr_3	PRK11183	679908	682538	-	PRK11183

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444725	Thaps268453.6, Thaps268453.5, Thaps268453.3, Thaps268453.2, Thaps268453.1, Thaps268453.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0107

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0242	0.38	6400 20000

Most Highly Correlated Transcripts

bd1835 (bd1835) NA 0.9161	263883 hypothetical protein 0.915	23973 BT1 0.9051	bd1840 (bd1840) NA 0.903	22846 hypothetical protein 0.8966	bd1877 (bd1877) NA 0.8883
10055 hypothetical protein 0.8862	22097 hypothetical protein 0.8852	bd1946 (bd1946) NA 0.8849	2674 hypothetical protein 0.8819

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Lact-deh-memb superfamily		D-lactate dehydrogenase, membrane binding; Members of this family are predominantly found in...	-	105.813	3.98E-25	434 - 730	superfamily	117872
PRK11183		D-lactate dehydrogenase; Provisional	-	281.731	6.25E-85	162 - 737	multi-dom	236872

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_46664	PHATR_46664	207885	183545	450888	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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