268640 Glyco_hydro_47
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268640 chr_4 Glyco_hydro_47 555463 556899 - Glyco_hydro_47

Synonyms

NCBI ID Ensembl Genomes exon ID
7452605 Thaps268640.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0138

Most Highly Correlated Transcripts

21434

AAA_26
0.9355

6710

hypothetical protein
0.9283

22128

DENN
0.9266

bd706

(bd706) NA
0.921

3310

hypothetical protein
0.9159

9364

hypothetical protein
0.9141

2494

UAA
0.9073

3161

hypothetical protein
0.9047

33717

PLN02856
0.9046

10474

hypothetical protein
0.9045

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_47 Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... cl08327 531.786 0 1 - 441 specific 250690
Glyco_hydro_47 superfamily Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... - 531.786 0 1 - 441 superfamily 263593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004571 GO:0005509 GO:0006487 GO:0016020 -

GO:0004571

mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Details: 
Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0006487

protein N-linked glycosylation

Details: 
A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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