268651 (RS9) PLN00189
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268651 chr_4 (RS9) PLN00189 684886 685601 - PLN00189
NCBI ID Ensembl Genomes exon ID
7452628 Thaps268651.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RS16) PLN00210
0.9032
(RL24) Ribosomal_L24e_L24 superfamily
0.8878
(RL18a) RPL20A
0.8707
(RL17) Ribosomal_L22
0.8606
(RL28) Ribosomal_L28e
0.8493
(RS3A) Ribosomal_S3Ae
0.8419
(RL8) PTZ00180
0.837
(RS6) Ribosomal_S6e superfamily
0.8358
(RL10) Ribosomal_L16_L10e
0.8355
PTZ00084
0.8243
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_S4 superfamily Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from... - 82.765 1.15E-20 8 - 108 superfamily 249643
Ribosomal_S4 superfamily Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from... - 82.765 1.15E-20 8 - 108 superfamily 249643
PLN00189 40S ribosomal protein S9; Provisional - 317.847 6.52E-111 1 - 190 multi-dom 177783
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6847 PHATRDRAFT_6847 217171 262519 61745 Cre08.g359750.t2.1 AT5G39850.1 354997
KEGG description KEGG Pathway
Ribosome map03010
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0003723 GO:0015935 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

small ribosomal subunit

Details: 
The smaller of the two subunits of a ribosome.
GO Category: 
CC
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