268807 (RIR1_2) PLN02437
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268807 chr_5 (RIR1_2) PLN02437 57562 60884 - PLN02437

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9233

6250

reductase
0.921

268735

(GPB1) WD40
0.9067

261462

hypothetical protein
0.9044

25129

hypothetical protein
0.9003

24550

W2_eIF4G1_like
0.8987

25689

hypothetical protein
0.8967

11949

Nop14
0.8942

1835

hypothetical protein
0.8916

20985

COG5593
0.8883

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNR_I Class I ribonucleotide reductase; Ribonucleotide reductase (RNR) catalyzes the reductive synthesis... cl09939 688.125 0 162 - 770 specific 153088
RNR_PFL superfamily Ribonucleotide reductase and Pyruvate formate lyase; Ribonucleotide reductase (RNR) and pyruvate... - 688.125 0 162 - 770 superfamily 245211
PLN02437 ribonucleoside--diphosphate reductase large subunit - 1458.8 0 1 - 811 multi-dom 178056

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45529 PHATRDRAFT_45529 Not available 223844 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004748 GO:0005971 GO:0006260 GO:0005507 -

GO:0004748

ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

Details: 
Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin.
GO Category: 
MF

GO:0005971

ribonucleoside-diphosphate reductase complex

Details: 
An enzyme complex composed of 2-4 or more subunits, which usually contains nonheme iron and requires ATP for catalysis. Catalyzes the formation of 2'-deoxyribonucleoside diphosphate from ribonucleoside diphosphate, using either thioredoxin disulfide or glutaredoxin disulfide as an acceptor.
GO Category: 
CC

GO:0006260

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

GO:0005507

copper ion binding

Details: 
Interacting selectively and non-covalently with copper (Cu) ions.
GO Category: 
MF

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