268830 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268830	chr_5	CAP10 superfamily	327066	329557	+	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451727	Thaps268830.6, Thaps268830.5, Thaps268830.3, Thaps268830.2, Thaps268830.4, Thaps268830.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0139

Most Highly Correlated Transcripts

270222 0.9617	7696 2_5_RNA_ligase2 0.9131	263695 Peroxin-3 superfamily 0.9083	25350 Methyltransf_24 0.9038	22370 GlcNAc superfamily 0.9016	13448 Sec1 0.8969
21984 hypothetical protein 0.8919	5034 hypothetical protein 0.8898	22776 Nucleotid_trans superfamily 0.8883	16295 FBPase 0.8853

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	108.278	3.19E-26	261 - 574	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	202779	68368	Not available	Cre13.g603100.t1.1	Not available	358530

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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