11342 RNA_pol_Rpc4 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11342 chr_19c_29 RNA_pol_Rpc4 superfamily 86916 88470 + RNA_pol_Rpc4 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451874 Thaps11342.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0242

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0229
 0.40

Most Highly Correlated Transcripts

2443

hypothetical protein
0.9147

4372

hypothetical protein
0.9046

264498

PRK00142
0.9022

22965

SrmB
0.8966

5540

hypothetical protein
0.8909

6648

hypothetical protein
0.8907

32229

MogA_MoaB
0.8902

261324

PLN02724
0.8851

37928

PLN03238
0.8827

30980

EngA2
0.8826

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_Rpc4 superfamily RNA polymerase III RPC4; Specific subunit for Pol III, the tRNA specific polymerase. - 72.7087 2.98E-15 362 - 510 superfamily 253030

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 244634 295061 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0006399 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0006399

tRNA metabolic process

Details: 
The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
GO Category: 
BP

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