26941 (NIR_1) PRK14989
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
26941 chr_2 (NIR_1) PRK14989 327173 330796 - PRK14989

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0192
 0.36

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.8602

bd524

(bd524) NA
0.7363

24172

hypothetical protein
0.7311

269297

S_TKc
0.7311

bd1667

(bd1667) Mpp10
0.7274

bd1934

(bd1934) NA
0.7189

bd643

(bd643) NA
0.7065

bd1946

(bd1946) NA
0.6984

17687

AAA
0.6963

25491

hypothetical protein
0.6935

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite... cl00938 135.331 7.79E-37 893 - 995 specific 239605
Rieske superfamily Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (... - 135.331 7.79E-37 893 - 995 superfamily 260709
NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the... cl19102 120.435 5.68E-31 656 - 802 specific 250346
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 120.435 5.68E-31 656 - 802 superfamily 267455
Fer2_BFD BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved cysteine... cl01093 68.507 5.90E-14 440 - 495 specific 252526
Fer2_BFD superfamily BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved cysteine... - 68.507 5.90E-14 440 - 495 superfamily 260786
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 64.4544 1.54E-12 585 - 644 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 64.4544 1.54E-12 585 - 644 superfamily 251971
PRK14989 nitrite reductase subunit NirD; Provisional - 897.941 0 1 - 865 multi-dom 184951

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13154 PHATRDRAFT_13154 200565 238081 Not available Not available AT3G27820.1 317690

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0015036 GO:0016491 GO:0016656 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016656

monodehydroascorbate reductase (NADH) activity

Details: 
Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate.
GO Category: 
MF

Add comment

Log in to post comments