269704 PRK09225
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269704 chr_13 PRK09225 848612 850518 - PRK09225

Synonyms

NCBI ID Ensembl Genomes exon ID
7450508 Thaps269704.2, Thaps269704.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

ThpsCp134

(rpl34) ribosomal protein L34
0.9239

6610

hypothetical protein
0.9186

ThpsCp082

(rpl34) ribosomal protein L34
0.9083

40725

(cdc48-2) CDC48
0.8806

ThpsCp029

(rpl1) ribosomal protein L1
0.8755

511

(GBP1) PRK09601
0.8715

35164

acolac_lg
0.8696

24832

hypothetical protein
0.8673

268062

PRK14293
0.8673

8119

hypothetical protein
0.8661

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-... cl00342 611.551 0 7 - 466 specific 107203
Trp-synth-beta_II superfamily Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-... - 611.551 0 7 - 466 superfamily 260370
PRK09225 threonine synthase; Validated - 649.517 0 8 - 471 multi-dom 236418

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49056 PHATRDRAFT_49056 276281 322179 462938 Not available Not available 313196

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003676 GO:0006520 GO:0003824 GO:0008152 GO:0004795 GO:0009088 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004795

threonine synthase activity

Details: 
Catalysis of the reaction: O-phospho-L-homoserine + H2O = L-threonine + phosphate.
GO Category: 
MF

GO:0009088

threonine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins.
GO Category: 
BP

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