28199 cyclophilin superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28199	chr_5	cyclophilin superfamily	303694	305300	-	cyclophilin superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449656	Thaps28199.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0336

Most Highly Correlated Transcripts

264072 (HSF43) HSF_DNA-bind superfamily 0.9198	33699 TRX_family 0.9115	263987 hypothetical protein 0.911	23954 hypothetical protein 0.9002	21274 hypothetical protein 0.895	168 (RPB1) PRK08566 0.8925
11314 hypothetical protein 0.8902	32704 PKc_like superfamily 0.89	264679 Syja_N 0.8898	9771 hypothetical protein 0.8885

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
cyclophilin superfamily		cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic...	-	207.109	1.33E-63	2 - 185	superfamily	260252
SYF2 superfamily		SYF2 splicing factor; Proteins in this family are involved in cell cycle progression and pre-mRNA...	-	85.4822	1.97E-19	390 - 529	superfamily	254677

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	203078	123838	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006457 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

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