29825 (RS8) PTZ00148Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
29825	chr_13	(RS8) PTZ00148	370768	371825	-	PTZ00148

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453018	Thaps29825.2, Thaps29825.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0047

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0227	0.33	5400 17000

Most Highly Correlated Transcripts

22476 (RL13e) Ribosomal_L13e superfamily 0.9021	24423 (rpl23) PTZ00054 0.8854	37032 (RL6) KOW_RPL6 0.8813	29955 (RS5) PTZ00091 0.8798	bd719 (bd719) NA 0.879	269961 Ribosomal_L7Ae superfamily 0.8767
26367 (RS15A) PTZ00158 0.8733	31084 PTZ00129 0.8724	24410 (RL32) Ribosomal_L32_L32e 0.8652	41319 (RL18) Ribosomal_L18e superfamily 0.857

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ribosomal_S8e_like		Eukaryotic/archaeal ribosomal protein S8e and similar proteins; This family contains the eukaryotic...	cl00880	190.809	9.87E-62	5 - 186	specific	211392
Ribosomal_S8e_like superfamily		Eukaryotic/archaeal ribosomal protein S8e and similar proteins; This family contains the eukaryotic...	-	190.809	9.87E-62	5 - 186	superfamily	260676
PTZ00148		40S ribosomal protein S8; Provisional	-	311.926	2.24E-108	1 - 200	multi-dom	240292

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_17414	PHATRDRAFT_17414	212907	248028	415402	Cre06.g272800.t1.2	AT5G59240.1	285611

KEGG

KEGG description	KEGG Pathway
Ribosome	map03010

GO Terms

GO:0005622 -

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