31358 TPRThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31358	chr_1	TPR	2204379	2206240	+	TPR

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445536	Thaps31358.2, Thaps31358.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0304

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0209	0.34	0.96 2100

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9198	263917 0.8777	bd938 (bd938) PBP2_NikA_DppA_OppA_like superfamily 0.8548	4071 hypothetical protein 0.803	263864 0.7974	262677 0.7878
270255 (NTT7) hypothetical protein 0.785	36650 hypothetical protein 0.7765	bd1803 (bd1803) NA 0.7749	36322 TrmA 0.772

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	62.0124	9.83E-12	355 - 454	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	62.0124	9.83E-12	355 - 454	superfamily	238112

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre07.g335750.t1.1	Not available	495507

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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