31562 HaemolyticThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31562	chr_1	Haemolytic	1765456	1766251	-	Haemolytic

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445047	Thaps31562.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0013

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0077	0.37	0.000000001 0.32

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9821	26991 GRX_GRXh_1_2_like 0.9202	261400 NA 0.9149	36649 SufE superfamily 0.9105	2488 hypothetical protein 0.9009	21168 hypothetical protein 0.8993
4603 COPIIcoated_ERV superfamily 0.8992	24906 hypothetical protein 0.8957	11680 hypothetical protein 0.8944	2832 hypothetical protein 0.8936

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Haemolytic		Haemolytic domain; This domain has haemolytic activity. It is found in short (73-103 amino acid)...	cl00506	112.143	2.07E-31	185 - 252	specific	250883
Haemolytic superfamily		Haemolytic domain; This domain has haemolytic activity. It is found in short (73-103 amino acid)...	-	112.143	2.07E-31	185 - 252	superfamily	260467

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9606	PHATRDRAFT_9606	179761	296040	60672	Cre17.g720183.t1.1	AT3G09310.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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