31778 Sybindin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31778 chr_2 Sybindin superfamily 2353869 2354405 - Sybindin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450463 Thaps31778.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0032

Most Highly Correlated Transcripts

9417

DUF1777
0.9269

263776

IMPase
0.9208

6238

hypothetical protein
0.9186

26991

GRX_GRXh_1_2_like
0.9184

36641

Aldolase_Class_I superfamily
0.9165

4876

hypothetical protein
0.9146

25068

hypothetical protein
0.9139

32096

GSH_gloB
0.9136

3693

SWIB
0.912

21383

hypothetical protein
0.9113

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sybindin superfamily Sybindin-like family; Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small... - 77.3581 1.81E-18 3 - 173 superfamily 248136

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_33914 PHATRDRAFT_33914 155033 309292 Not available Not available Not available 309290

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005801 GO:0006888 -

GO:0005801

cis-Golgi network

Details: 
The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.
GO Category: 
CC

GO:0006888

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

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