31851 BKR_SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31851 chr_2 BKR_SDR_c 338062 339439 - BKR_SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps31851.2, Thaps31851.1, Thaps31851.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0200
 0.21

Most Highly Correlated Transcripts

31851

BKR_SDR_c
1

ThpsCp069

(cbbX) CbbX
0.968

bd1306

(bd1306) NA
0.9674

270308

hypothetical protein
0.9599

270312

hypothetical protein
0.9578

bd1645

(bd1645) tpt
0.9546

270348

hypothetical protein
0.9524

270304

hypothetical protein
0.9524

bd1474

(bd1474) phytoene_desat
0.9514

34681

FabZ
0.9506

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BKR_SDR_c beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs; This... cl09931 348.383 3.55E-120 73 - 312 specific 187594
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 348.383 3.55E-120 73 - 312 superfamily 263925
fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated - 345.255 5.71E-119 73 - 316 multi-dom 235500

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13073 PHATRDRAFT_13073 188091 183641 438770 Cre03.g172000.t1.2 AT1G24360.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 GO:0004316 GO:0006633 GO:0051287 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0004316

3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity

Details: 
Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
GO Category: 
MF

GO:0006633

fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

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