32285 COG1832Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32285	chr_2	COG1832	852233	852889	-	COG1832

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446532	Thaps32285.1, Thaps32285.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0009

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0117	0.49	7400 44000

Most Highly Correlated Transcripts

30701 PRK05279 0.9337	25033 tRNA_bind_EMAP-II_like 0.9249	19826 LSm1 0.922	6952 hypothetical protein 0.9194	7936 ATP-synt_10 superfamily 0.9175	270222 0.9134
38482 hypothetical protein 0.9115	32209 fer2 0.9061	37934 GRX_PICOT_like 0.9043	34158 DUF336 superfamily 0.9039

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG1832		Predicted CoA-binding protein [General function prediction only]	cl17356	180.192	5.25E-58	23 - 161	specific	224745
CoA_binding superfamily		CoA binding domain; This domain has a Rossmann fold and is found in a number of proteins including...	-	180.192	5.25E-58	23 - 161	superfamily	266646

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50959	PHATRDRAFT_50959	227484	294851	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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