3361 SbcCThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3361	chr_3	SbcC	774917	778096	+	SbcC

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441717	Thaps3361.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0094

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0220	0.24	18000 120

Most Highly Correlated Transcripts

bd1852 (bd1852) NA 0.9586	bd886 (bd886) NA 0.9399	1931 hypothetical protein 0.9381	6536 hypothetical protein 0.9364	4596 hypothetical protein 0.9348	bd765 (bd765) NA 0.9337
8926 MDR8 0.9322	24408 hypothetical protein 0.9296	6330 hypothetical protein 0.9295	1594 hypothetical protein 0.9281

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SbcC		ATPase involved in DNA repair [DNA replication, recombination, and repair]	-	87.8935	6.03E-18	259 - 820	multi-dom	223496

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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