36764 PRK05279
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36764 chr_12 PRK05279 984920 988801 - PRK05279

Synonyms

NCBI ID Ensembl Genomes exon ID
7443200 Thaps36764.3, Thaps36764.4, Thaps36764.2, Thaps36764.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0149

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0269
 0.41

Most Highly Correlated Transcripts

30701

PRK05279
0.9775

32468

STKc_CDC2L1
0.9656

3180

hypothetical protein
0.9497

4916

hypothetical protein
0.9447

2540

hypothetical protein
0.944

10898

hypothetical protein
0.9414

25468

Methyltransf_22
0.9389

38736

S_TKc
0.9383

4873

hypothetical protein
0.9372

4192

hypothetical protein
0.9371

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAK superfamily Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-... - 243.232 1.90E-72 751 - 1037 superfamily 260430
PRK05279 N-acetylglutamate synthase; Validated - 421.867 2.56E-135 750 - 1188 multi-dom 235386

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008080 GO:0004042 GO:0005737 GO:0006526 -

GO:0008080

N-acetyltransferase activity

Details: 
Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
GO Category: 
MF

GO:0004042

acetyl-CoA:L-glutamate N-acetyltransferase activity

Details: 
Catalysis of the reaction: L-glutamate + acetyl-CoA = N-acetyl-L-glutamate + CoA + H(+).
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006526

arginine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
GO Category: 
BP

Add comment

Log in to post comments