3693 SWIB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3693 chr_3 SWIB 1568117 1569269 - SWIB

Synonyms

NCBI ID Ensembl Genomes exon ID
7451311 Thaps3693.2, Thaps3693.1, Thaps3693.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0454

Most Highly Correlated Transcripts

30701

PRK05279
0.9366

3180

hypothetical protein
0.9334

261400

NA
0.9287

31598

cyclophilin superfamily
0.9241

7707

hypothetical protein
0.9216

37118

FeThRed_B
0.9213

23833

hypothetical protein
0.9187

262363

hypothetical protein
0.9179

264556

FBPase
0.9163

41655

Chloroa_b-bind
0.9151

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SWIB SWIB/MDM2 domain; This family includes the SWIB domain and the MDM2 domain. The p53-associated... cl02489 92.6669 9.79E-24 207 - 280 specific 251152
SWIB superfamily SWIB/MDM2 domain; This family includes the SWIB domain and the MDM2 domain. The p53-associated... - 92.6669 9.79E-24 207 - 280 superfamily 261306
SWIB SWIB/MDM2 domain; This family includes the SWIB domain and the MDM2 domain. The p53-associated... cl02489 92.6669 9.79E-24 207 - 280 specific 251152
SWIB superfamily SWIB/MDM2 domain; This family includes the SWIB domain and the MDM2 domain. The p53-associated... - 92.6669 9.79E-24 207 - 280 superfamily 261306

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32255 PHATRDRAFT_32255 144345 319660 Not available Cre02.g118250.t1.1 AT1G49520.1 475850

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005216 GO:0006811 GO:0016020 GO:0005634 -

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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