36995 LplAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36995	chr_12	LplA	704978	705820	-	LplA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447982	Thaps36995.1, Thaps36995.3, Thaps36995.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0498

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0017	0.42

Most Highly Correlated Transcripts

270222 0.9285	11563 hypothetical protein 0.9273	7466 hypothetical protein 0.9267	261172 (ADH2) MDR superfamily 0.9247	6997 hypothetical protein 0.9237	2073 hypothetical protein 0.9221
25446 PP2Cc 0.9207	1676 hypothetical protein 0.9206	23170 hypothetical protein 0.9187	2621 hypothetical protein 0.9173

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LplA		Lipoate-protein ligase A [Coenzyme metabolism]	cl14057	82.4333	2.24E-19	1 - 192	specific	223173
BPL_LplA_LipB superfamily		Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-...	-	82.4333	2.24E-19	1 - 192	superfamily	265422

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
9447	PHATRDRAFT_12459	PHATRDRAFT_12459	179099	109780	76173	Cre01.g053750.t1.2	AT3G29010.1	562513

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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