37948 UPF0047Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37948	chr_17	UPF0047	385297	386349	-	UPF0047

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444224	Thaps37948.2, Thaps37948.4, Thaps37948.3, Thaps37948.1, Thaps37948.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0120

Most Highly Correlated Transcripts

268822 hypothetical protein 0.875	24475 (RPT3) PTZ00454 0.8723	21722 Aldo_ket_red 0.8722	2974 hypothetical protein 0.8715	5087 hypothetical protein 0.8703	5653 hypothetical protein 0.8694
9462 hypothetical protein 0.869	25509 hypothetical protein 0.8689	4525 hypothetical protein 0.8677	16114 PLN02350 0.8666

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UPF0047		Uncharacterized protein family UPF0047; This family has no known function. The alignment contains a...	cl00439	193.85	6.47E-63	89 - 218	specific	250947
UPF0047 superfamily		Uncharacterized protein family UPF0047; This family has no known function. The alignment contains a...	-	193.85	6.47E-63	89 - 218	superfamily	260424

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49270	PHATRDRAFT_49270	Not available	186531	Not available	Cre17.g739300.t1.2	AT1G21065.1	300364

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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