3980 DDE_Tnp_4
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3980 chr_3 DDE_Tnp_4 2277383 2278882 + DDE_Tnp_4

Synonyms

NCBI ID Ensembl Genomes exon ID
7452742 Thaps3980.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0312

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0002
 0.43

Most Highly Correlated Transcripts

bd816

(bd816) NA
0.8672

bd153

(bd153) NA
0.8626

bd824

(bd824) NA
0.8456

bd630

(bd630) NA
0.8368

bd1056

(bd1056) NA
0.8092

bd650

(bd650) NA
0.7895

bd616

(bd616) NA
0.7838

263845

RRM_SF superfamily
0.7712

bd771

(bd771) NA
0.7688

bd1875

(bd1875) NA
0.7632

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DDE_Tnp_4 DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably... cl17710 141.23 1.18E-39 232 - 394 specific 257687
DDE_Tnp_4 superfamily DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably... - 141.23 1.18E-39 232 - 394 superfamily 266781

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 316091

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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