39824 (HSP104) chaperone_ClpB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39824 chr_3 (HSP104) chaperone_ClpB 563978 566861 + chaperone_ClpB

Synonyms

NCBI ID Ensembl Genomes exon ID
7444697 Thaps39824.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0486

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0154
 0.36

Most Highly Correlated Transcripts

bd739

(bd739) NA
0.9276

bd1802

(bd1802) NA
0.9246

25207

hypothetical protein
0.895

bd1803

(bd1803) NA
0.8719

bd1891

(bd1891) COG3899
0.8703

268481

(Tp_HSF_2.2a) HSF_DNA-bind
0.8656

bd740

(bd740) NA
0.8536

7335

hypothetical protein
0.8529

23662

Tryp_SPc
0.8471

268204

hypothetical protein
0.8454

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 74.8751 1.90E-15 621 - 757 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 74.8751 1.90E-15 621 - 757 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 74.8751 1.90E-15 621 - 757 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 74.8751 1.90E-15 621 - 757 superfamily 267297
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... cl11083 78.2065 3.72E-17 796 - 876 specific 255983
ClpB_D2-small superfamily C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... - 78.2065 3.72E-17 796 - 876 superfamily 264218
chaperone_ClpB ATP-dependent chaperone ClpB; Members of this protein family are the bacterial ATP-dependent... - 1108.1 0 6 - 877 multi-dom 234173

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 177716 458913 Not available AT4G14670.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0000166 GO:0017111 GO:0005515 GO:0019538 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0019538

protein metabolic process

Details: 
The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification.
GO Category: 
BP

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