40597 RPE65 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40597	chr_5	RPE65 superfamily	193550	195823	+	RPE65 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447266	Thaps40597.2, Thaps40597.1, Thaps40597.3, Thaps40597.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0039

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0235	0.25	0.49 12

Most Highly Correlated Transcripts

21235 RpsA 0.9028	23462 hypothetical protein 0.9009	ThpsCp097 (rpl23) ribosomal protein L23 0.8981	6610 hypothetical protein 0.8968	268270 Patched 0.895	ThpsCp110 (rpl6) ribosomal protein L6 0.8929
ThpsCp098 (rpl2) ribosomal protein L2 0.8832	5078 PLN02530 0.8832	ThpsCp108 (rpl5) ribosomal protein L5 0.88	ThpsCp096 (rpl4) ribosomal protein L4 0.8799

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RPE65 superfamily		Retinal pigment epithelial membrane protein; This family represents a retinal pigment epithelial...	-	287.205	3.64E-89	82 - 577	superfamily	263961

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43490	PHATRDRAFT_43490	211063	184991	Not available	Not available	AT4G18350.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003834 -

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