40884 (RPA1) RNAP_I_RPA1_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40884 chr_6 (RPA1) RNAP_I_RPA1_N 202272 208717 + RNAP_I_RPA1_N

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0195
 0.28

Most Highly Correlated Transcripts

268130

hypothetical protein
0.9578

24015

Urb2 superfamily
0.9474

268735

(GPB1) WD40
0.946

21173

hypothetical protein
0.9452

23650

hypothetical protein
0.941

20985

COG5593
0.9405

40529

COG2319
0.9376

25129

hypothetical protein
0.9346

25434

PRK00142
0.9338

268252

Utp21 superfamily
0.9337

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_I_RPA1_N Largest subunit (RPA1) of eukaryotic RNA polymerase I (RNAP I), N-terminal domain; RPA1 is the... cl19114 1191.99 0 17 - 1043 specific 259844
RNAP_largest_subunit_N superfamily Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal... - 1191.99 0 17 - 1043 superfamily 267467
RNAP_I_Rpa1_C Largest subunit (Rpa1) of Eukaryotic RNA polymerase I (RNAP I), C-terminal domain; RNA polymerase I... cl11429 330.309 5.31E-102 1190 - 1666 specific 132722
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 330.309 5.31E-102 1190 - 1666 superfamily 142634
PRK08566 DNA-directed RNA polymerase subunit A'; Validated - 532.509 2.43E-167 15 - 1070 multi-dom 236292
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 295.356 9.47E-88 997 - 1624 multi-dom 147266

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd955 PHATRDRAFT_bd955 236706 260237 101352 Cre12.g529600.t1.2 AT3G57660.1 322406

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0005634 GO:0006350 GO:0005524 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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