4215 LRR_RI superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4215 chr_4 LRR_RI superfamily 476536 477592 - LRR_RI superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447453 Thaps4215.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0278

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0006
 0.41

Most Highly Correlated Transcripts

bd1071

(bd1071) NA
0.7727

bd1396

(bd1396) rpl19
0.7275

bd977

(bd977) rps14
0.7117

2058

hypothetical protein
0.67

bd722

(bd722) NA
0.6585

bd1258

(bd1258) fer2
0.6513

ThpsCp022

(psaE) photosystem I subunit IV
0.6466

bd93

(bd93) NA
0.6384

bd1676

(bd1676) RPS2
0.6364

4108

hypothetical protein
0.6181

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LRR_RI superfamily Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue... - 73.1585 6.26E-15 184 - 333 superfamily 238064

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 257019

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016491 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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