4260 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4260 chr_4 WD40 588945 590607 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7447477 Thaps4260.3, Thaps4260.4, Thaps4260.1, Thaps4260.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0136

Most Highly Correlated Transcripts

17582

HAD-SF-IIA-hyp3
0.9521

6481

hypothetical protein
0.9377

11490

hypothetical protein
0.9273

27811

PRK07777
0.9269

22589

EMP24_GP25L
0.9262

30701

PRK05279
0.9258

4064

NADB_Rossmann superfamily
0.9248

4249

hypothetical protein
0.9245

34594

(UNG) UDG_F1
0.9233

33075

RimI
0.9205

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 175.216 1.75E-51 86 - 381 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 175.216 1.75E-51 86 - 381 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 128.668 2.93E-33 61 - 363 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36142 PHATRDRAFT_36142 185924 318797 68302 Cre17.g713900.t1.2 AT3G18140.1 289141

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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