5515 SAM_superfamily superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5515	chr_5	SAM_superfamily superfamily	1411145	1411980	+	SAM_superfamily superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7453212	Thaps5515.2, Thaps5515.1, Thaps5515.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0125

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9429	bd694 (bd694) NA 0.7693	bd884 (bd884) NA 0.7305	bd693 (bd693) HSF_DNA-bind superfamily 0.7282	2027 hypothetical protein 0.7032	7016 hypothetical protein 0.7007
bd887 (bd887) NA 0.6981	bd1850 (bd1850) NA 0.6981	5938 hypothetical protein 0.6928	2047 hypothetical protein 0.682

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SAM_superfamily superfamily		SAM (Sterile alpha motif ); SAM (Sterile Alpha Motif) domain is a module consisting of...	-	55.4012	7.88E-11	17 - 78	superfamily	265771

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47783	PHATRDRAFT_47783	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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