5859 COG1233Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5859	chr_6	COG1233	68919	70929	-	COG1233

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442321	Thaps5859.3, Thaps5859.4, Thaps5859.2, Thaps5859.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0349

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0005	0.39	0.000011 0.6

Most Highly Correlated Transcripts

4108 hypothetical protein 0.961	263917 0.8742	11633 hypothetical protein 0.699	4971 hypothetical protein 0.6946	2047 hypothetical protein 0.6894	bd1790 (bd1790) NA 0.688
4189 hypothetical protein 0.6788	9649 hypothetical protein 0.6725	263864 0.6724	36322 TrmA 0.661

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG1233		Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and...	-	120.617	1.61E-29	120 - 561	multi-dom	224154

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0006118 -

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