5927 UBQ superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5927	chr_6	UBQ superfamily	280909	282249	+	UBQ superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448394	Thaps5927.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0428

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0145	0.29	0.0013 1.1

Most Highly Correlated Transcripts

5664 hypothetical protein 0.8944	4691 hypothetical protein 0.8779	12836 EEP superfamily 0.873	23115 UBCc superfamily 0.8705	7330 NYN_YacP 0.8701	13448 Sec1 0.8698
269655 PRK09330 0.8646	32098 PTZ00063 0.859	36204 ATM1 0.8532	22862 hypothetical protein 0.8508

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBQ superfamily		Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins....	-	71.0732	2.27E-15	365 - 442	superfamily	260222

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44360	PHATRDRAFT_44360	262863	326172	Not available	Not available	AT4G10790.1	348097

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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