PITA_10 megaCluster: 8 Residual: 0.17

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_10 8 0.17 15 0 0.943049 0

Members

Displaying 1 - 25 of 25
170762 nucleoporin 155

Details for - - nucleoporin 155

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170762

Tuberculist Genomic Region

170787 histone deacetylase 10

Details for - - histone deacetylase 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170787

Tuberculist Genomic Region

17268 Meis homeobox 1

Details for RP23-377H12.3 - Meis homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17268

Tuberculist Genomic Region

19060 protein phosphatase 5, catalytic subunit

Details for - - protein phosphatase 5, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19060

Tuberculist Genomic Region

217304 CD300 antigen like family member B

Details for - - CD300 antigen like family member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217304

Tuberculist Genomic Region

231866 zinc finger protein 12

Details for - - zinc finger protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231866

Tuberculist Genomic Region

238831 peptidylprolyl isomerase domain and WD repeat containing 1

Details for - - peptidylprolyl isomerase domain and WD repeat containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238831

Tuberculist Genomic Region

23908 heparan sulfate 2-O-sulfotransferase 1

Details for - - heparan sulfate 2-O-sulfotransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23908

Tuberculist Genomic Region

23938 mitogen-activated protein kinase kinase 5

Details for - - mitogen-activated protein kinase kinase 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23938

Tuberculist Genomic Region

240064 zinc finger protein 799

Details for - - zinc finger protein 799

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240064

Tuberculist Genomic Region

270198 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 270198

Tuberculist Genomic Region

29858 phosphomannomutase 1

Details for - - phosphomannomutase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29858

Tuberculist Genomic Region

320197 RIKEN cDNA D830046C22 gene

Details for - - RIKEN cDNA D830046C22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320197

Tuberculist Genomic Region

52563 CDC23 cell division cycle 23

Details for - - CDC23 cell division cycle 23

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52563

Tuberculist Genomic Region

56742 proline/serine-rich coiled-coil 1

Details for RP23-27B23.8 - proline/serine-rich coiled-coil 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56742

Tuberculist Genomic Region

65099 interleukin-1 receptor-associated kinase 1 binding protein 1

Details for - - interleukin-1 receptor-associated kinase 1 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65099

Tuberculist Genomic Region

66559 methionyl aminopeptidase type 1D (mitochondrial)

Details for RP23-419H3.1 - methionyl aminopeptidase type 1D (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66559

Tuberculist Genomic Region

66945 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

Details for - - succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66945

Tuberculist Genomic Region

66948 acyl-Coenzyme A dehydrogenase family, member 8

Details for - - acyl-Coenzyme A dehydrogenase family, member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66948

Tuberculist Genomic Region

70152 methyltransferase like 7A1

Details for - - methyltransferase like 7A1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70152

Tuberculist Genomic Region

74552 NIPA-like domain containing 3

Details for RP23-332E2.5 - NIPA-like domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74552

Tuberculist Genomic Region

74610 ATP-binding cassette, sub-family B (MDR/TAP), member 8

Details for - - ATP-binding cassette, sub-family B (MDR/TAP), member 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74610

Tuberculist Genomic Region

75578 FGGY carbohydrate kinase domain containing

Details for RP23-472I13.1 - FGGY carbohydrate kinase domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75578

Tuberculist Genomic Region

78752 chondroitin sulfate N-acetylgalactosaminyltransferase 2

Details for - - chondroitin sulfate N-acetylgalactosaminyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78752

Tuberculist Genomic Region

67936 WD repeat domain 55

Details for - - WD repeat domain 55

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67936

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.43 TTYTGTTTGKNT FOXI1_MA0042.1 370 CATTTWTTTNA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.23 ACGCGA NA 1.41 TCGGACGA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.66 TCGGAC NA NA 0.84 GCKTACGC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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