PITA_103 megaCluster: 9 Residual: 0.27

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_103 9 0.27 14 0 0.852712 0

Members

Displaying 1 - 37 of 37
110749 chromatin assembly factor 1, subunit B (p60)

Details for - - chromatin assembly factor 1, subunit B (p60)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110749

Tuberculist Genomic Region

11306 ATP-binding cassette, sub-family B (MDR/TAP), member 7

Details for RP23-202N14.1 - ATP-binding cassette, sub-family B (MDR/TAP), member 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11306

Tuberculist Genomic Region

12649 checkpoint kinase 1

Details for - - checkpoint kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12649

Tuberculist Genomic Region

14788 G protein-coupled receptor 162

Details for - - G protein-coupled receptor 162

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14788

Tuberculist Genomic Region

15201 helicase, lymphoid specific

Details for - - helicase, lymphoid specific

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15201

Tuberculist Genomic Region

15288 hydroxymethylbilane synthase

Details for - - hydroxymethylbilane synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15288

Tuberculist Genomic Region

15547 TRM2 tRNA methyltransferase 2A

Details for - - TRM2 tRNA methyltransferase 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15547

Tuberculist Genomic Region

20148 dehydrogenase/reductase (SDR family) member 3

Details for RP23-133N19.1 - dehydrogenase/reductase (SDR family) member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20148

Tuberculist Genomic Region

207965 valosin containing protein lysine (K) methyltransferase

Details for - - valosin containing protein lysine (K) methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 207965

Tuberculist Genomic Region

22154 tubulin, beta 5 class I

Details for RP24-180B11.2 - tubulin, beta 5 class I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22154

Tuberculist Genomic Region

225115 supervillin

Details for - - supervillin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225115

Tuberculist Genomic Region

22619 sialic acid acetylesterase

Details for - - sialic acid acetylesterase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22619

Tuberculist Genomic Region

26416 mitogen-activated protein kinase 14

Details for RP24-137E7.1 - mitogen-activated protein kinase 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26416

Tuberculist Genomic Region

52679 E2F transcription factor 7

Details for - - E2F transcription factor 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52679

Tuberculist Genomic Region

67276 exoribonuclease 1

Details for - - exoribonuclease 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67276

Tuberculist Genomic Region

68082 dual specificity phosphatase 19

Details for RP23-393F9.2 - dual specificity phosphatase 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68082

Tuberculist Genomic Region

68428 STEAP family member 3

Details for - - STEAP family member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68428

Tuberculist Genomic Region

72017 cytochrome b5 reductase 1

Details for - - cytochrome b5 reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72017

Tuberculist Genomic Region

72194 F-box and leucine-rich repeat protein 20

Details for RP23-309H19.11-002 - F-box and leucine-rich repeat protein 20

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72194

Tuberculist Genomic Region

74772 ATPase type 13A2

Details for RP23-183L1.4 - ATPase type 13A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74772

Tuberculist Genomic Region

76491 abhydrolase domain containing 14b

Details for - - abhydrolase domain containing 14b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76491

Tuberculist Genomic Region

76843 denticleless homolog (Drosophila)

Details for - - denticleless homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76843

Tuberculist Genomic Region

77219 prostaglandin reductase 2

Details for - - prostaglandin reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77219

Tuberculist Genomic Region

94223 DiGeorge syndrome critical region gene 8

Details for - - DiGeorge syndrome critical region gene 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 94223

Tuberculist Genomic Region

102115 deoxyhypusine hydroxylase/monooxygenase

Details for - - deoxyhypusine hydroxylase/monooxygenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102115

Tuberculist Genomic Region

18744 praja1, RING-H2 motif containing

Details for RP23-414J22.4 - praja1, RING-H2 motif containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18744

Tuberculist Genomic Region

216443 methionine-tRNA synthetase

Details for - - methionine-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216443

Tuberculist Genomic Region

226419 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

Details for - - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226419

Tuberculist Genomic Region

56207 ubiquitin carboxyl-terminal esterase L5

Details for - - ubiquitin carboxyl-terminal esterase L5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56207

Tuberculist Genomic Region

67037 polyamine-modulated factor 1

Details for - - polyamine-modulated factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67037

Tuberculist Genomic Region

68145 Ewing tumor-associated antigen 1

Details for RP23-353E13.3 - Ewing tumor-associated antigen 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68145

Tuberculist Genomic Region

69305 decapping enzyme, scavenger

Details for - - decapping enzyme, scavenger

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69305

Tuberculist Genomic Region

108911 regulator of chromosome condensation 2

Details for RP23-275J10.2 - regulator of chromosome condensation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108911

Tuberculist Genomic Region

11534 adenosine kinase

Details for - - adenosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11534

Tuberculist Genomic Region

60411 centromere protein K

Details for - - centromere protein K

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60411

Tuberculist Genomic Region

110173 mannosidase, beta A, lysosomal

Details for - - mannosidase, beta A, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110173

Tuberculist Genomic Region

72503 RIKEN cDNA 2610507B11 gene

Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72503

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
RUNX2_RUNX_DBD_dimeric_16_1 0.405405 0.000000184

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000043 ANAAAANAAAA NA 7.4 TWAAAATKKAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.31 GCGTCC NA 1.43 NCGCGCGN

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.46 TCTGAT NA NA 0.58 NNTCTGAT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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