PITA_113 megaCluster: 11 Residual: 0.19

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_113 11 0.19 15 0 0.940649 0

Members

Displaying 1 - 31 of 31
106821 O-acyl-ADP-ribose deacylase 1

Details for - - O-acyl-ADP-ribose deacylase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106821

Tuberculist Genomic Region

15510 heat shock protein 1 (chaperonin)

Details for - - heat shock protein 1 (chaperonin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15510

Tuberculist Genomic Region

20018 polymerase (RNA) I polypeptide D

Details for AL513345.2 - polymerase (RNA) I polypeptide D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20018

Tuberculist Genomic Region

22099 translin

Details for - - translin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22099

Tuberculist Genomic Region

231329 polymerase (RNA) II (DNA directed) polypeptide B

Details for - - polymerase (RNA) II (DNA directed) polypeptide B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231329

Tuberculist Genomic Region

27643 ubiquitin-like 4

Details for RP23-436K3.13-006 - ubiquitin-like 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27643

Tuberculist Genomic Region

58521 EP300 interacting inhibitor of differentiation 1

Details for RP23-323D9.2 - EP300 interacting inhibitor of differentiation 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 58521

Tuberculist Genomic Region

78523 mitochondrial ribosomal protein L9

Details for - - mitochondrial ribosomal protein L9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78523

Tuberculist Genomic Region

100233175 cDNA sequence AK010878

Details for - - cDNA sequence AK010878

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100233175

Tuberculist Genomic Region

13476 receptor accessory protein 5

Details for - - receptor accessory protein 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13476

Tuberculist Genomic Region

15182 histone deacetylase 2

Details for - - histone deacetylase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15182

Tuberculist Genomic Region

237823 phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)

Details for RP23-153N12.1 - phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237823

Tuberculist Genomic Region

241490 RNA binding motif protein 45

Details for RP23-211L7.2 - RNA binding motif protein 45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241490

Tuberculist Genomic Region

53861 zinc finger, RAN-binding domain containing 2

Details for - - zinc finger, RAN-binding domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53861

Tuberculist Genomic Region

56046 ubiquinol-cytochrome c reductase complex assembly factor 1

Details for RP23-380B10.2 - ubiquinol-cytochrome c reductase complex assembly factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56046

Tuberculist Genomic Region

65103 ADP-ribosylation factor-like 6 interacting protein 6

Details for RP23-265N10.1 - ADP-ribosylation factor-like 6 interacting protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65103

Tuberculist Genomic Region

66162 bolA-like 2 (E. coli)

Details for - - bolA-like 2 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66162

Tuberculist Genomic Region

66880 arginine/serine-rich coiled-coil 1

Details for - - arginine/serine-rich coiled-coil 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66880

Tuberculist Genomic Region

67089 proteasome (prosome, macropain) 26S subunit, ATPase, 6

Details for - - proteasome (prosome, macropain) 26S subunit, ATPase, 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67089

Tuberculist Genomic Region

67242 gem (nuclear organelle) associated protein 6

Details for - - gem (nuclear organelle) associated protein 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67242

Tuberculist Genomic Region

67493 methyltransferase like 16

Details for RP23-174M12.2 - methyltransferase like 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67493

Tuberculist Genomic Region

68153 general transcription factor II E, polypeptide 2 (beta subunit)

Details for - - general transcription factor II E, polypeptide 2 (beta subunit)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68153

Tuberculist Genomic Region

69554 kelch domain containing 2

Details for - - kelch domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69554

Tuberculist Genomic Region

70257 RIKEN cDNA 2010107E04 gene

Details for - - RIKEN cDNA 2010107E04 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70257

Tuberculist Genomic Region

74326 heterogeneous nuclear ribonucleoprotein R

Details for RP24-315O23.1 - heterogeneous nuclear ribonucleoprotein R

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74326

Tuberculist Genomic Region

76687 signal peptidase complex subunit 3 homolog (S. cerevisiae)

Details for - - signal peptidase complex subunit 3 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76687

Tuberculist Genomic Region

98415 nuclear casein kinase and cyclin-dependent kinase substrate 1

Details for - - nuclear casein kinase and cyclin-dependent kinase substrate 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98415

Tuberculist Genomic Region

105446 guanosine monophosphate reductase 2

Details for - - guanosine monophosphate reductase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105446

Tuberculist Genomic Region

13682 eukaryotic translation initiation factor 4A2

Details for - - eukaryotic translation initiation factor 4A2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13682

Tuberculist Genomic Region

217558 G2/M-phase specific E3 ubiquitin ligase

Details for - - G2/M-phase specific E3 ubiquitin ligase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217558

Tuberculist Genomic Region

65098 zinc finger, AN1-type domain 6

Details for - - zinc finger, AN1-type domain 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65098

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SP1_MA0079.2, V_SP1_03_M02281, V_MAZ_Q6_01_M02023 1, 1, 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000025 AAAAMAAARRAA NA 77 AATTTTTNARMC NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.43 CGGCGT NA 1.49 CCTNCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.62 TGATTG NA NA 0.68 ATGATTGA mmu-mir-96-3p 7mer_m8

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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