PITA_118 megaCluster: 11 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_118 11 0.14 3 0.108 0.637551 0.977

Members

Displaying 1 - 36 of 36
107513 signal sequence receptor, alpha

Details for - - signal sequence receptor, alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107513

Tuberculist Genomic Region

16145 interferon gamma induced GTPase

Details for RP24-499A8.4 - interferon gamma induced GTPase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16145

Tuberculist Genomic Region

20728 Spi-C transcription factor (Spi-1/PU.1 related)

Details for - - Spi-C transcription factor (Spi-1/PU.1 related)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20728

Tuberculist Genomic Region

244183 tripartite motif-containing 30B

Details for - - tripartite motif-containing 30B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244183

Tuberculist Genomic Region

26378 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal

Details for - - 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26378

Tuberculist Genomic Region

320438 asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)

Details for RP23-35D18.4 - asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320438

Tuberculist Genomic Region

50798 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase

Details for RP23-209M8.6 - glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50798

Tuberculist Genomic Region

56532 receptor-interacting serine-threonine kinase 3

Details for - - receptor-interacting serine-threonine kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56532

Tuberculist Genomic Region

66043 ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

Details for - - ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66043

Tuberculist Genomic Region

67222 serum response factor binding protein 1

Details for - - serum response factor binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67222

Tuberculist Genomic Region

67844 RAB32, member RAS oncogene family

Details for - - RAB32, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67844

Tuberculist Genomic Region

723827 microRNA 221

Details for - - microRNA 221

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723827

Tuberculist Genomic Region

72569 Bardet-Biedl syndrome 5 (human)

Details for RP23-436E15.1 - Bardet-Biedl syndrome 5 (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72569

Tuberculist Genomic Region

80885 niacin receptor 1

Details for - - niacin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80885

Tuberculist Genomic Region

100503948 predicted gene, 19983

Details for - - predicted gene, 19983

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503948

Tuberculist Genomic Region

100504320 predicted gene, 20169

Details for - - predicted gene, 20169

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504320

Tuberculist Genomic Region

100952 elastin microfibril interfacer 1

Details for - - elastin microfibril interfacer 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100952

Tuberculist Genomic Region

106878 small integral membrane protein 3

Details for - - small integral membrane protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106878

Tuberculist Genomic Region

107272 phosphoserine aminotransferase 1

Details for - - phosphoserine aminotransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107272

Tuberculist Genomic Region

12021 BRCA1 associated RING domain 1

Details for - - BRCA1 associated RING domain 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12021

Tuberculist Genomic Region

12785 cellular nucleic acid binding protein

Details for - - cellular nucleic acid binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12785

Tuberculist Genomic Region

15368 heme oxygenase (decycling) 1

Details for - - heme oxygenase (decycling) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15368

Tuberculist Genomic Region

19720 tripartite motif-containing 27

Details for - - tripartite motif-containing 27

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19720

Tuberculist Genomic Region

20971 syndecan 4

Details for RP23-462O16.6 - syndecan 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20971

Tuberculist Genomic Region

216864 macrophage galactose N-acetyl-galactosamine specific lectin 2

Details for DN-476D14.2 - macrophage galactose N-acetyl-galactosamine specific lectin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216864

Tuberculist Genomic Region

226409 zinc finger, RAN-binding domain containing 3

Details for - - zinc finger, RAN-binding domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226409

Tuberculist Genomic Region

236312 pyrin and HIN domain family, member 1

Details for - - pyrin and HIN domain family, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236312

Tuberculist Genomic Region

24071 synaptojanin 2 binding protein

Details for - - synaptojanin 2 binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24071

Tuberculist Genomic Region

243025 transmembrane protein 156

Details for - - transmembrane protein 156

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 243025

Tuberculist Genomic Region

27878 transcriptional adaptor 1

Details for - - transcriptional adaptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27878

Tuberculist Genomic Region

66079 transmembrane protein 42

Details for - - transmembrane protein 42

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66079

Tuberculist Genomic Region

66799 ubiquitin-conjugating enzyme E2W (putative)

Details for - - ubiquitin-conjugating enzyme E2W (putative)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66799

Tuberculist Genomic Region

67442 retinol saturase (all trans retinol 13,14 reductase)

Details for - - retinol saturase (all trans retinol 13,14 reductase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67442

Tuberculist Genomic Region

69482 nucleoporin 35

Details for RP23-393F9.4 - nucleoporin 35

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69482

Tuberculist Genomic Region

70024 minichromosome maintenance deficient 10 (S. cerevisiae)

Details for RP23-379M5.1 - minichromosome maintenance deficient 10 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70024

Tuberculist Genomic Region

73710 tubulin, beta 2B class IIB

Details for - - tubulin, beta 2B class IIB

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73710

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
SRY_MA0084.1 0.125 0.000016

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000049 TTTNAANAAAAA NA 18000 AAAKTTTACAAT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.85 CGGACG MIZF_MA0131.1, V$MIZF_01_M01182 0.96 GGNAAGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 GCGACT NA NA 0.58 TAGGTCTA mmu-mir-1839-3p 7mer_m8

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-669a-3-3p 0.357143 0.0000602

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