PITA_125 megaCluster: 9 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_125 9 0.21 15 0 0.927093 0

Members

Displaying 1 - 43 of 43
209815 zinc finger, DHHC domain containing 7

Details for - - zinc finger, DHHC domain containing 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102193

Tuberculist Genomic Region

210029 TBC1 domain family, member 25

Details for RP23-27I6.9 - TBC1 domain family, member 25

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209815

Tuberculist Genomic Region

216190 meteorin, glial cell differentiation regulator-like

Details for RP23-274J5.3 - meteorin, glial cell differentiation regulator-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210029

Tuberculist Genomic Region

223753 adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2

Details for - - adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216190

Tuberculist Genomic Region

228880 ceramide kinase

Details for - - ceramide kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223753

Tuberculist Genomic Region

233280 zinc finger, MYND-type containing 8

Details for RP23-108D12.1 - zinc finger, MYND-type containing 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228880

Tuberculist Genomic Region

234797 non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)

Details for - - non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233280

Tuberculist Genomic Region

235527 RIKEN cDNA 6430548M08 gene

Details for - - RIKEN cDNA 6430548M08 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234797

Tuberculist Genomic Region

23853 phospholipid scramblase 4

Details for - - phospholipid scramblase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235527

Tuberculist Genomic Region

246229 differentially expressed in FDCP 6

Details for - - differentially expressed in FDCP 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23853

Tuberculist Genomic Region

27029 basic, immunoglobulin-like variable motif containing

Details for - - basic, immunoglobulin-like variable motif containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246229

Tuberculist Genomic Region

27053 N-sulfoglucosamine sulfohydrolase (sulfamidase)

Details for RP23-25M3.2 - N-sulfoglucosamine sulfohydrolase (sulfamidase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27029

Tuberculist Genomic Region

272347 asparagine synthetase

Details for - - asparagine synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27053

Tuberculist Genomic Region

66659 zinc finger protein 398

Details for - - zinc finger protein 398

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 272347

Tuberculist Genomic Region

66821 acid phosphatase 6, lysophosphatidic

Details for - - acid phosphatase 6, lysophosphatidic

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66659

Tuberculist Genomic Region

66834 BCS1-like (yeast)

Details for - - BCS1-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66821

Tuberculist Genomic Region

66950 acyl-CoA thioesterase 13

Details for RP23-92G13.5 - acyl-CoA thioesterase 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66834

Tuberculist Genomic Region

68281 transmembrane protein 206

Details for - - transmembrane protein 206

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66950

Tuberculist Genomic Region

68977 RIKEN cDNA 4930430F08 gene

Details for - - RIKEN cDNA 4930430F08 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68281

Tuberculist Genomic Region

70750 hydroxyacylglutathione hydrolase-like

Details for - - hydroxyacylglutathione hydrolase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68977

Tuberculist Genomic Region

70984 3-ketodihydrosphingosine reductase

Details for - - 3-ketodihydrosphingosine reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70750

Tuberculist Genomic Region

71972 RIKEN cDNA 4931406C07 gene

Details for - - RIKEN cDNA 4931406C07 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70984

Tuberculist Genomic Region

72852 dynamin binding protein

Details for - - dynamin binding protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71972

Tuberculist Genomic Region

73338 metallo-beta-lactamase domain containing 2

Details for - - metallo-beta-lactamase domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72852

Tuberculist Genomic Region

74478 inositol 1,4,5-triphosphate receptor interacting protein-like 1

Details for RP23-26A12.4 - inositol 1,4,5-triphosphate receptor interacting protein-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73338

Tuberculist Genomic Region

76594 sorting nexin 29

Details for - - sorting nexin 29

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74478

Tuberculist Genomic Region

14886 DnaJ (Hsp40) homolog, subfamily C, member 18

Details for - - DnaJ (Hsp40) homolog, subfamily C, member 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76594

Tuberculist Genomic Region

15288 general transcription factor II I

Details for - - general transcription factor II I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14886

Tuberculist Genomic Region

171207 hydroxymethylbilane synthase

Details for - - hydroxymethylbilane synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15288

Tuberculist Genomic Region

18569 Rho GTPase activating protein 4

Details for RP23-252M19.2 - Rho GTPase activating protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 171207

Tuberculist Genomic Region

192654 programmed cell death 4

Details for - - programmed cell death 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18569

Tuberculist Genomic Region

20597 phospholipase A2, group XV

Details for - - phospholipase A2, group XV

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192654

Tuberculist Genomic Region

20913 sphingomyelin phosphodiesterase 1, acid lysosomal

Details for - - sphingomyelin phosphodiesterase 1, acid lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20597

Tuberculist Genomic Region

210710 syntaxin binding protein 4

Details for RP23-101M12.1 - syntaxin binding protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20913

Tuberculist Genomic Region

217946 growth factor receptor bound protein 2-associated protein 3

Details for RP23-184H6.3 - growth factor receptor bound protein 2-associated protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 210710

Tuberculist Genomic Region

224008 cell division cycle associated 7 like

Details for - - cell division cycle associated 7 like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217946

Tuberculist Genomic Region

228875 scaffolding protein involved i DNA repair

Details for - - scaffolding protein involved i DNA repair

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224008

Tuberculist Genomic Region

29869 solute carrier family 35, member C2

Details for RP23-41B20.3 - solute carrier family 35, member C2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228875

Tuberculist Genomic Region

320244 unc-51 like kinase 2

Details for RP23-278F12.5 - unc-51 like kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 29869

Tuberculist Genomic Region

70974 tubulin tyrosine ligase-like family, member 5

Details for - - tubulin tyrosine ligase-like family, member 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320244

Tuberculist Genomic Region

72674 phosphoglucomutase 2-like 1

Details for - - phosphoglucomutase 2-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70974

Tuberculist Genomic Region

76267 adiponectin receptor 1

Details for - - adiponectin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72674

Tuberculist Genomic Region

Details for - - fatty acid desaturase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76267

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ERR1_Q2_M00511 0.372093 0.0000125

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.000024 CCCCGCCCCYC V$SP1SP3_Q4_M01219, V$ETF_Q6_M00695, V$CACBINDINGPROTEIN_Q6_M00720, ZNF740_C2H2_full_monomeric_10_1 0.0004 AAASAAAMAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.24 CGCGAC Zfp161.2, Max.2 1.28 ACCGGACG

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.49 GTCGAG NA NA 0.56 AGTTAAGG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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