PITA_127 megaCluster: 9 Residual: 0.15

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_127 9 0.15 15 0 0.959112 0

Members

Displaying 1 - 26 of 26
108911 regulator of chromosome condensation 2

Details for RP23-275J10.2 - regulator of chromosome condensation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108911

Tuberculist Genomic Region

110173 mannosidase, beta A, lysosomal

Details for - - mannosidase, beta A, lysosomal

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110173

Tuberculist Genomic Region

14697 guanine nucleotide binding protein (G protein), beta 5

Details for - - guanine nucleotide binding protein (G protein), beta 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14697

Tuberculist Genomic Region

26926 apoptosis-inducing factor, mitochondrion-associated 1

Details for RP23-35N5.1 - apoptosis-inducing factor, mitochondrion-associated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26926

Tuberculist Genomic Region

52538 acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)

Details for - - acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52538

Tuberculist Genomic Region

71538 f-box protein 9

Details for MNCb-2471 - f-box protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71538

Tuberculist Genomic Region

72503 RIKEN cDNA 2610507B11 gene

Details for RP23-185A18.9 - RIKEN cDNA 2610507B11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72503

Tuberculist Genomic Region

108735 SFT2 domain containing 2

Details for - - SFT2 domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108735

Tuberculist Genomic Region

117591 solute carrier family 2 (facilitated glucose transporter), member 9

Details for - - solute carrier family 2 (facilitated glucose transporter), member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 117591

Tuberculist Genomic Region

12566 cyclin-dependent kinase 2

Details for - - cyclin-dependent kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12566

Tuberculist Genomic Region

15547 TRM2 tRNA methyltransferase 2A

Details for - - TRM2 tRNA methyltransferase 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15547

Tuberculist Genomic Region

18105 NAD(P)H dehydrogenase, quinone 2

Details for - - NAD(P)H dehydrogenase, quinone 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18105

Tuberculist Genomic Region

20226 seryl-aminoacyl-tRNA synthetase

Details for RP23-37G19.1 - seryl-aminoacyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20226

Tuberculist Genomic Region

20480 ClpB caseinolytic peptidase B

Details for - - ClpB caseinolytic peptidase B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20480

Tuberculist Genomic Region

216527 cerebral cavernous malformation 2

Details for RP23-169J19.3 - cerebral cavernous malformation 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216527

Tuberculist Genomic Region

217031 transcriptional adaptor 2A

Details for RP23-395B22.4 - transcriptional adaptor 2A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217031

Tuberculist Genomic Region

22017 thiopurine methyltransferase

Details for - - thiopurine methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22017

Tuberculist Genomic Region

223433 family with sequence similarity 105, member A

Details for - - family with sequence similarity 105, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223433

Tuberculist Genomic Region

227102 ORM1-like 1 (S. cerevisiae)

Details for - - ORM1-like 1 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227102

Tuberculist Genomic Region

231834 sorting nexin 8

Details for - - sorting nexin 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231834

Tuberculist Genomic Region

26406 mitogen-activated protein kinase kinase kinase 3

Details for RP23-81G14.5 - mitogen-activated protein kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26406

Tuberculist Genomic Region

269702 M-phase phosphoprotein 9

Details for - - M-phase phosphoprotein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269702

Tuberculist Genomic Region

52626 CDKN2A interacting protein N-terminal like

Details for RP23-263C23.1 - CDKN2A interacting protein N-terminal like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52626

Tuberculist Genomic Region

64214 regulator of G-protein signaling 18

Details for - - regulator of G-protein signaling 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64214

Tuberculist Genomic Region

72549 receptor accessory protein 4

Details for - - receptor accessory protein 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72549

Tuberculist Genomic Region

76491 abhydrolase domain containing 14b

Details for - - abhydrolase domain containing 14b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76491

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NA

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.23 GCCCCGCCCCM V$ETF_Q6_M00695, V$CACBINDINGPROTEIN_Q6_M00720 19000 ARANAGNRGAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.22 CGCTGG NA 1.4 AGCGCGCA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 GCGTCA NA NA 0.78 GCCTTTTC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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