PITA_135 megaCluster: 2 Residual: 0.18 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_135	2	0.18	15	0	0.930896	0

Members

Displaying 1 - 30 of 30

100382 expressed sequence AW011738 Details for - - expressed sequence AW011738 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100382 Tuberculist Genomic Region	11540 adenosine A2a receptor Details for - - adenosine A2a receptor GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11540 Tuberculist Genomic Region
13003 versican Details for - - versican GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 13003 Tuberculist Genomic Region	170755 serum/glucocorticoid regulated kinase 3 Details for - - serum/glucocorticoid regulated kinase 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 170755 Tuberculist Genomic Region
22021 protein-tyrosine sulfotransferase 1 Details for - - protein-tyrosine sulfotransferase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22021 Tuberculist Genomic Region	100504219 predicted gene, 20117 Details for - - predicted gene, 20117 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504219 Tuberculist Genomic Region
102132 RIKEN cDNA E230013L22 gene Details for - - RIKEN cDNA E230013L22 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 102132 Tuberculist Genomic Region	12822 collagen, type XVIII, alpha 1 Details for - - collagen, type XVIII, alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12822 Tuberculist Genomic Region
16169 interleukin 15 receptor, alpha chain Details for RP23-114B13.4 - interleukin 15 receptor, alpha chain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16169 Tuberculist Genomic Region	17119 MAX dimerization protein 1 Details for - - MAX dimerization protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17119 Tuberculist Genomic Region
18126 nitric oxide synthase 2, inducible Details for RP23-341J22.2 - nitric oxide synthase 2, inducible GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18126 Tuberculist Genomic Region	19088 protein kinase, cAMP dependent regulatory, type II beta Details for RP23-193M19.1 - protein kinase, cAMP dependent regulatory, type II beta GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19088 Tuberculist Genomic Region
218613 mesoderm induction early response 1, family member 3 Details for - - mesoderm induction early response 1, family member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218613 Tuberculist Genomic Region	218793 ubiquitin-conjugating enzyme E2E 2 Details for - - ubiquitin-conjugating enzyme E2E 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 218793 Tuberculist Genomic Region
22271 uridine phosphorylase 1 Details for RP23-104F14.1 - uridine phosphorylase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22271 Tuberculist Genomic Region	22329 vascular cell adhesion molecule 1 Details for - - vascular cell adhesion molecule 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22329 Tuberculist Genomic Region
22670 tripartite motif-containing 26 Details for RP23-77N9.1 - tripartite motif-containing 26 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22670 Tuberculist Genomic Region	227659 solute carrier family 2 (facilitated glucose transporter), member 6 Details for RP23-449M10.2 - solute carrier family 2 (facilitated glucose transporter), member 6 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227659 Tuberculist Genomic Region
22793 zyxin Details for - - zyxin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22793 Tuberculist Genomic Region	227960 grancalcin Details for RP23-34J8.3 - grancalcin GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227960 Tuberculist Genomic Region
258783 olfactory receptor 920 Details for - - olfactory receptor 920 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 258783 Tuberculist Genomic Region	320910 integrin beta 8 Details for - - integrin beta 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 320910 Tuberculist Genomic Region
329795 transmembrane protein 67 Details for RP23-203A12.5 - transmembrane protein 67 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 329795 Tuberculist Genomic Region	620913 predicted gene 12185 Details for RP23-14F5.7 - predicted gene 12185 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 620913 Tuberculist Genomic Region
652925 transmembrane protein 243, mitochondrial Details for - - transmembrane protein 243, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 652925 Tuberculist Genomic Region	667034 purine-nucleoside phosphorylase 2 Details for - - purine-nucleoside phosphorylase 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 667034 Tuberculist Genomic Region
671535 poly (ADP-ribose) polymerase family, member 10 Details for - - poly (ADP-ribose) polymerase family, member 10 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 671535 Tuberculist Genomic Region	74096 hydrogen voltage-gated channel 1 Details for - - hydrogen voltage-gated channel 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74096 Tuberculist Genomic Region
74243 SLX4 interacting protein Details for RP23-173O12.2 - SLX4 interacting protein GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74243 Tuberculist Genomic Region	76187 alcohol dehydrogenase, iron containing, 1 Details for - - alcohol dehydrogenase, iron containing, 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 76187 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ZFP281_01_M01597	1	0

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.004	AANNAAAGWAAA	NA	4000	GGGGTGGGGNKG	SP1_MA0079.2, Klf4_MA0039.2, V$SP1_02_M01303, V$ZFP281_01_M01597, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$CKROX_Q2_M01175, V$EKLF_Q5_M01874, V$SP1_Q4_01_M00932, V$SP1_03_M02281, V$SP1_Q6_M00196, V$MAZ_Q6_01_M02023, V$ZFP281_04_M02831, V$UF1H3BETA_Q6_M01068, V$PAX4_03_M00378, V$GC_01_M00255, V$BCL6B_04_M02844, V$MAZ_Q6_M00649, V$ZFP410_04_M02936, V$MAZR_01_M00491, V$ZNF219_01_M01122, V$ZFP740_03_M02834, V$KLF7_03_M02773, V$ZBP89_Q4_M01816, V$GLI3_Q5_01_M01657, V$SREBP1_Q6_M00749, V$CACD_01_M01113, V$KID3_01_M01160, V$SP1_01_M00008, V$GKLF_02_M01588, V$CACCCBINDINGFACTOR_Q6_M00721, V$EGR2_Q6_M02092, Zfp281.2, Bcl6b.2, Zfp410.1, Klf7.1, Zfp740.1, Ascl2.2, Smad3.1, Sox13.2, Egr1.2, Sp4.1, Egr1.1, Zfp410.2, Sp4.2

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
0.92	ATCGCG	NA	1.17	GTGACGCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.61	GCCGCG	NA	NA	0.76	CGTCNCGA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
mmu-miR-153	0.73913	0.0000116

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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