PITA_136 megaCluster: 1 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_136 1 0.23 15 0 0.911956 0

Members

Displaying 1 - 52 of 52
102693 pleckstrin homology-like domain, family B, member 1

Details for - - pleckstrin homology-like domain, family B, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102693

Tuberculist Genomic Region

110796 teashirt zinc finger family member 1

Details for - - teashirt zinc finger family member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110796

Tuberculist Genomic Region

114874 DDHD domain containing 1

Details for - - DDHD domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114874

Tuberculist Genomic Region

11655 aminolevulinic acid synthase 1

Details for - - aminolevulinic acid synthase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11655

Tuberculist Genomic Region

12700 cytokine inducible SH2-containing protein

Details for - - cytokine inducible SH2-containing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12700

Tuberculist Genomic Region

14629 glutamate-cysteine ligase, catalytic subunit

Details for - - glutamate-cysteine ligase, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14629

Tuberculist Genomic Region

14706 guanine nucleotide binding protein (G protein), gamma 4

Details for - - guanine nucleotide binding protein (G protein), gamma 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14706

Tuberculist Genomic Region

19386 RAN binding protein 2

Details for - - RAN binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19386

Tuberculist Genomic Region

20698 sphingosine kinase 1

Details for RP23-193A16.4 - sphingosine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20698

Tuberculist Genomic Region

208647 cAMP responsive element binding protein 3-like 2

Details for - - cAMP responsive element binding protein 3-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208647

Tuberculist Genomic Region

27279 tumor necrosis factor receptor superfamily, member 12a

Details for - - tumor necrosis factor receptor superfamily, member 12a

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27279

Tuberculist Genomic Region

50493 thioredoxin reductase 1

Details for - - thioredoxin reductase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50493

Tuberculist Genomic Region

56620 C-type lectin domain family 4, member n

Details for - - C-type lectin domain family 4, member n

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56620

Tuberculist Genomic Region

57349 pro-platelet basic protein

Details for - - pro-platelet basic protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57349

Tuberculist Genomic Region

66282 translation machinery associated 16 homolog (S. cerevisiae)

Details for - - translation machinery associated 16 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66282

Tuberculist Genomic Region

66341 EP300 interacting inhibitor of differentiation 3

Details for - - EP300 interacting inhibitor of differentiation 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66341

Tuberculist Genomic Region

67876 coenzyme Q10 homolog B (S. cerevisiae)

Details for - - coenzyme Q10 homolog B (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67876

Tuberculist Genomic Region

100503374 predicted gene, 17435

Details for - - predicted gene, 17435

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503374

Tuberculist Genomic Region

100504211 predicted gene, 20114

Details for - - predicted gene, 20114

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504211

Tuberculist Genomic Region

12142 PR domain containing 1, with ZNF domain

Details for - - PR domain containing 1, with ZNF domain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12142

Tuberculist Genomic Region

12176 BCL2/adenovirus E1B interacting protein 3

Details for - - BCL2/adenovirus E1B interacting protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12176

Tuberculist Genomic Region

12349 carbonic anhydrase 2

Details for - - carbonic anhydrase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12349

Tuberculist Genomic Region

14062 coagulation factor II (thrombin) receptor

Details for - - coagulation factor II (thrombin) receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14062

Tuberculist Genomic Region

14102 Fas (TNF receptor superfamily member 6)

Details for - - Fas (TNF receptor superfamily member 6)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14102

Tuberculist Genomic Region

16153 interleukin 10

Details for AL513351.1 - interleukin 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16153

Tuberculist Genomic Region

16362 interferon regulatory factor 1

Details for RP23-303F24.1 - interferon regulatory factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16362

Tuberculist Genomic Region

17133 v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)

Details for - - v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17133

Tuberculist Genomic Region

18712 proviral integration site 1

Details for - - proviral integration site 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18712

Tuberculist Genomic Region

20303 chemokine (C-C motif) ligand 4

Details for RP23-320E6.8 - chemokine (C-C motif) ligand 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20303

Tuberculist Genomic Region

214944 MOB kinase activator 3B

Details for RP23-454N16.6 - MOB kinase activator 3B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214944

Tuberculist Genomic Region

224840 triggering receptor expressed on myeloid cells-like 4

Details for - - triggering receptor expressed on myeloid cells-like 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224840

Tuberculist Genomic Region

23972 3'-phosphoadenosine 5'-phosphosulfate synthase 2

Details for - - 3'-phosphoadenosine 5'-phosphosulfate synthase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23972

Tuberculist Genomic Region

320509 RIKEN cDNA 9930022D16 gene

Details for RP23-465A12.2 - RIKEN cDNA 9930022D16 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320509

Tuberculist Genomic Region

333639 mastermind-like domain containing 1

Details for - - mastermind-like domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 333639

Tuberculist Genomic Region

64213 suppression of tumorigenicity 7

Details for - - suppression of tumorigenicity 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64213

Tuberculist Genomic Region

66598 RIKEN cDNA 3110001I22 gene

Details for - - RIKEN cDNA 3110001I22 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66598

Tuberculist Genomic Region

70435 inverted formin, FH2 and WH2 domain containing

Details for - - inverted formin, FH2 and WH2 domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70435

Tuberculist Genomic Region

70686 dual specificity phosphatase 16

Details for - - dual specificity phosphatase 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70686

Tuberculist Genomic Region

71648 optineurin

Details for RP23-379M5.2 - optineurin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71648

Tuberculist Genomic Region

723827 microRNA 221

Details for - - microRNA 221

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723827

Tuberculist Genomic Region

72515 WD repeat domain 43

Details for - - WD repeat domain 43

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72515

Tuberculist Genomic Region

72536 T cell activation Rho GTPase activating protein

Details for - - T cell activation Rho GTPase activating protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72536

Tuberculist Genomic Region

72747 tetratricopeptide repeat domain 39C

Details for - - tetratricopeptide repeat domain 39C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72747

Tuberculist Genomic Region

74442 sphingomyelin synthase 2

Details for - - sphingomyelin synthase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74442

Tuberculist Genomic Region

99929 TCDD-inducible poly(ADP-ribose) polymerase

Details for - - TCDD-inducible poly(ADP-ribose) polymerase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99929

Tuberculist Genomic Region

18033 interleukin 6

Details for - - interleukin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16193

Tuberculist Genomic Region

239273 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105

Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18033

Tuberculist Genomic Region

240354 ATP-binding cassette, sub-family C (CFTR/MRP), member 4

Details for - - ATP-binding cassette, sub-family C (CFTR/MRP), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239273

Tuberculist Genomic Region

381290 mucosa associated lymphoid tissue lymphoma translocation gene 1

Details for - - mucosa associated lymphoid tissue lymphoma translocation gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240354

Tuberculist Genomic Region

547253 ATPase, Ca++ transporting, plasma membrane 4

Details for - - ATPase, Ca++ transporting, plasma membrane 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381290

Tuberculist Genomic Region

108078 poly (ADP-ribose) polymerase family, member 14

Details for - - poly (ADP-ribose) polymerase family, member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 547253

Tuberculist Genomic Region

Details for - - oxidized low density lipoprotein (lectin-like) receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108078

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NFKB_C_M00208 0.4375 0.0000000136

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000013 MAAASAAAAAAA NA 4.3 CTCCKCCYSCTC SP1_MA0079.2, V$SP1_03_M02281, V$FPM315_01_M01587, V$SP1_Q2_01_M00933, V$GKLF_Q4_M01835

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.08 GTCGCG Zfp161.2, Max.2 1.08 GGGNCGCG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.42 TCGTCG NA NA 0.44 AATCGCYG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

Add comment

Log in or register to post comments