PITA_138 megaCluster: 2 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_138 2 0.24 15 0 0.901983 0

Members

Displaying 1 - 51 of 51
13805 endoglin

Details for RP23-17P12.4 - endoglin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13805

Tuberculist Genomic Region

14659 glutamine repeat protein 1

Details for - - glutamine repeat protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14659

Tuberculist Genomic Region

16913 proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

Details for - - proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16913

Tuberculist Genomic Region

17940 NLR family, apoptosis inhibitory protein 1

Details for - - NLR family, apoptosis inhibitory protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17940

Tuberculist Genomic Region

19419 RAS guanyl releasing protein 1

Details for RP23-73I19.3 - RAS guanyl releasing protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19419

Tuberculist Genomic Region

213233 TAP binding protein-like

Details for - - TAP binding protein-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213233

Tuberculist Genomic Region

227671 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Details for RP23-430H1.5 - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227671

Tuberculist Genomic Region

230979 tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)

Details for RP24-89N4.1 - tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230979

Tuberculist Genomic Region

381560 X Kell blood group precursor related family member 8 homolog

Details for RP23-442A20.2 - X Kell blood group precursor related family member 8 homolog

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381560

Tuberculist Genomic Region

56055 GTP binding protein 2

Details for - - GTP binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56055

Tuberculist Genomic Region

59045 START domain containing 3

Details for RP23-355L10.4 - START domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 59045

Tuberculist Genomic Region

60361 membrane-spanning 4-domains, subfamily A, member 4B

Details for - - membrane-spanning 4-domains, subfamily A, member 4B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60361

Tuberculist Genomic Region

629303 predicted gene 11435

Details for RP23-320E6.1 - predicted gene 11435

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 629303

Tuberculist Genomic Region

66307 isochorismatase domain containing 1

Details for - - isochorismatase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66307

Tuberculist Genomic Region

666926 predicted gene 8369

Details for - - predicted gene 8369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 666926

Tuberculist Genomic Region

69368 WD repeat and FYVE domain containing 1

Details for - - WD repeat and FYVE domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69368

Tuberculist Genomic Region

70086 cysteinyl leukotriene receptor 2

Details for - - cysteinyl leukotriene receptor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70086

Tuberculist Genomic Region

71782 ankyrin repeat and LEM domain containing 2

Details for - - ankyrin repeat and LEM domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71782

Tuberculist Genomic Region

76624 RIKEN cDNA 1700099I09 gene

Details for - - RIKEN cDNA 1700099I09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76624

Tuberculist Genomic Region

101187 poly (ADP-ribose) polymerase family, member 11

Details for - - poly (ADP-ribose) polymerase family, member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101187

Tuberculist Genomic Region

109032 Sp110 nuclear body protein

Details for - - Sp110 nuclear body protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 109032

Tuberculist Genomic Region

11610 angiotensin II, type I receptor-associated protein

Details for RP23-139J21.6 - angiotensin II, type I receptor-associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11610

Tuberculist Genomic Region

14089 fibroblast activation protein

Details for RP23-343C17.4 - fibroblast activation protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14089

Tuberculist Genomic Region

14254 FMS-like tyrosine kinase 1

Details for - - FMS-like tyrosine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14254

Tuberculist Genomic Region

15039 histocompatibility 2, T region locus 22

Details for - - histocompatibility 2, T region locus 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15039

Tuberculist Genomic Region

17454 Moloney leukemia virus 10

Details for - - Moloney leukemia virus 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17454

Tuberculist Genomic Region

17954 nucleosome assembly protein 1-like 2

Details for - - nucleosome assembly protein 1-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17954

Tuberculist Genomic Region

209590 interleukin 23 receptor

Details for - - interleukin 23 receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 209590

Tuberculist Genomic Region

21355 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)

Details for RP23-123G8.1 - transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21355

Tuberculist Genomic Region

213783 pleckstrin homology domain containing, family G (with RhoGef domain) member 1

Details for - - pleckstrin homology domain containing, family G (with RhoGef domain) member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213783

Tuberculist Genomic Region

21954 troponin I, cardiac 3

Details for - - troponin I, cardiac 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21954

Tuberculist Genomic Region

225845 phospholipase A2, group XVI

Details for - - phospholipase A2, group XVI

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225845

Tuberculist Genomic Region

228094 ceramide kinase-like

Details for RP23-335P15.2 - ceramide kinase-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228094

Tuberculist Genomic Region

231712 TRAF type zinc finger domain containing 1

Details for - - TRAF type zinc finger domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231712

Tuberculist Genomic Region

235587 poly (ADP-ribose) polymerase family, member 3

Details for - - poly (ADP-ribose) polymerase family, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235587

Tuberculist Genomic Region

237253 low density lipoprotein receptor-related protein 11

Details for - - low density lipoprotein receptor-related protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 237253

Tuberculist Genomic Region

244882 tumor necrosis factor, alpha-induced protein 8-like 3

Details for - - tumor necrosis factor, alpha-induced protein 8-like 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 244882

Tuberculist Genomic Region

27416 ATP-binding cassette, sub-family C (CFTR/MRP), member 5

Details for - - ATP-binding cassette, sub-family C (CFTR/MRP), member 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27416

Tuberculist Genomic Region

277414 transformation related protein 53 inducible protein 11

Details for RP23-217C12.1 - transformation related protein 53 inducible protein 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 277414

Tuberculist Genomic Region

56380 AT rich interactive domain 3B (BRIGHT-like)

Details for - - AT rich interactive domain 3B (BRIGHT-like)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56380

Tuberculist Genomic Region

67809 regulator of microtubule dynamics 3

Details for RP23-15I21.5 - regulator of microtubule dynamics 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67809

Tuberculist Genomic Region

71086 RIKEN cDNA 4933412E12 gene

Details for - - RIKEN cDNA 4933412E12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71086

Tuberculist Genomic Region

74568 mixed lineage kinase domain-like

Details for - - mixed lineage kinase domain-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74568

Tuberculist Genomic Region

77578 B cell CLL/lymphoma 9

Details for - - B cell CLL/lymphoma 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77578

Tuberculist Genomic Region

77590 carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15

Details for - - carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77590

Tuberculist Genomic Region

78830 solute carrier family 25 (mitochondrial carrier, Aralar), member 12

Details for RP23-299A2.2 - solute carrier family 25 (mitochondrial carrier, Aralar), member 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 78830

Tuberculist Genomic Region

93842 immunoglobulin superfamily, member 9

Details for - - immunoglobulin superfamily, member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 93842

Tuberculist Genomic Region

110751 a disintegrin and metallopeptidase domain 33

Details for RP23-228H14.4 - a disintegrin and metallopeptidase domain 33

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 110751

Tuberculist Genomic Region

16542 kinase insert domain protein receptor

Details for - - kinase insert domain protein receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16542

Tuberculist Genomic Region

69440 DENN/MADD domain containing 6B

Details for - - DENN/MADD domain containing 6B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69440

Tuberculist Genomic Region

98432 PH domain and leucine rich repeat protein phosphatase 1

Details for - - PH domain and leucine rich repeat protein phosphatase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 98432

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF2_Q6_M01882 0.428571 0.000000195

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000014 AAARNNAAANM 17000 TTKTAKTTMAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.81 GCACCG NA 0.82 GCGCCGAA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.43 CGCTCG NA NA 0.6 GCGNGTTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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