PITA_140 megaCluster: 11 Residual: 0.22

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_140 11 0.22 15 0 0.90263 0

Members

Displaying 1 - 31 of 31
12442 cyclin B2

Details for - - cyclin B2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12442

Tuberculist Genomic Region

231070 insulin induced gene 1

Details for - - insulin induced gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231070

Tuberculist Genomic Region

66395 AHNAK nucleoprotein (desmoyokin)

Details for - - AHNAK nucleoprotein (desmoyokin)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66395

Tuberculist Genomic Region

70083 meteorin, glial cell differentiation regulator

Details for - - meteorin, glial cell differentiation regulator

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70083

Tuberculist Genomic Region

71878 family with sequence similarity 83, member D

Details for RP23-119H5.1 - family with sequence similarity 83, member D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71878

Tuberculist Genomic Region

72183 sorting nexin 6

Details for - - sorting nexin 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72183

Tuberculist Genomic Region

100039740 ribosomal protein S18 pseudogene

Details for - - ribosomal protein S18 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100039740

Tuberculist Genomic Region

11799 baculoviral IAP repeat-containing 5

Details for RP23-268N22.2 - baculoviral IAP repeat-containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11799

Tuberculist Genomic Region

12532 cell division cycle 25C

Details for - - cell division cycle 25C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12532

Tuberculist Genomic Region

12615 centromere protein A

Details for - - centromere protein A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12615

Tuberculist Genomic Region

14645 glutamate-ammonia ligase (glutamine synthetase)

Details for - - glutamate-ammonia ligase (glutamine synthetase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14645

Tuberculist Genomic Region

16907 lamin B2

Details for - - lamin B2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16907

Tuberculist Genomic Region

17219 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)

Details for - - minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17219

Tuberculist Genomic Region

18005 NIMA (never in mitosis gene a)-related expressed kinase 2

Details for - - NIMA (never in mitosis gene a)-related expressed kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18005

Tuberculist Genomic Region

192156 mevalonate (diphospho) decarboxylase

Details for - - mevalonate (diphospho) decarboxylase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 192156

Tuberculist Genomic Region

21877 thymidine kinase 1

Details for RP23-151N19.8 - thymidine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21877

Tuberculist Genomic Region

235320 zinc finger and BTB domain containing 16

Details for - - zinc finger and BTB domain containing 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235320

Tuberculist Genomic Region

381293 kinesin family member 14

Details for - - kinesin family member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381293

Tuberculist Genomic Region

382010 centrosomal protein 44

Details for - - centrosomal protein 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382010

Tuberculist Genomic Region

52033 PDZ binding kinase

Details for - - PDZ binding kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52033

Tuberculist Genomic Region

56702 histone cluster 1, H1b

Details for RP23-138F20.13-001 - histone cluster 1, H1b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56702

Tuberculist Genomic Region

56743 linker for activation of T cells family, member 2

Details for - - linker for activation of T cells family, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56743

Tuberculist Genomic Region

66177 ubiquitin-like 5

Details for - - ubiquitin-like 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66177

Tuberculist Genomic Region

67381 mediator complex subunit 4

Details for - - mediator complex subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67381

Tuberculist Genomic Region

69263 replication factor C (activator 1) 3

Details for - - replication factor C (activator 1) 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69263

Tuberculist Genomic Region

74754 24-dehydrocholesterol reductase

Details for RP23-97O7.9 - 24-dehydrocholesterol reductase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74754

Tuberculist Genomic Region

83815 centromere protein Q

Details for - - centromere protein Q

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83815

Tuberculist Genomic Region

19357 RAD21 homolog (S. pombe)

Details for - - RAD21 homolog (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19357

Tuberculist Genomic Region

73804 kinesin family member 2C

Details for RP23-59L24.10-001 - kinesin family member 2C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73804

Tuberculist Genomic Region

230098 Rho guanine nucleotide exchange factor (GEF) 39

Details for RP23-195K8.7 - Rho guanine nucleotide exchange factor (GEF) 39

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230098

Tuberculist Genomic Region

16906 lamin B1

Details for - - lamin B1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16906

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
NFYA_MA0060.1 0.533333 0.00000295

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00034 WAAGNAAACARA FOXA1_MA0148.1, FOXD1_MA0031.1, Foxd3_MA0041.1, Foxa2_MA0047.2, FOXF2_MA0030.1, FOXO3_MA0157.1, SRY_MA0084.1, V$FREAC4_01_M00292 0.029 TNKMTNTCTTTT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.22 CGYCGC NA 1.36 TGGCGCGA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.74 AGCGGG NA NA 0.78 TNGCTAGT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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