PITA_142 megaCluster: 2 Residual: 0.21

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_142 2 0.21 15 0 0.907337 0

Members

Displaying 1 - 26 of 26
100040233 predicted gene 10334

Details for - - predicted gene 10334

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040233

Tuberculist Genomic Region

17874 hyaluronan synthase1

Details for - - hyaluronan synthase1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15116

Tuberculist Genomic Region

20779 myeloid differentiation primary response gene 88

Details for - - myeloid differentiation primary response gene 88

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17874

Tuberculist Genomic Region

22165 Rous sarcoma oncogene

Details for RP23-169M4.1 - Rous sarcoma oncogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20779

Tuberculist Genomic Region

226517 TXK tyrosine kinase

Details for - - TXK tyrosine kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22165

Tuberculist Genomic Region

231130 Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)

Details for - - Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226517

Tuberculist Genomic Region

246728 TNFAIP3 interacting protein 2

Details for - - TNFAIP3 interacting protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231130

Tuberculist Genomic Region

668139 2'-5' oligoadenylate synthetase 2

Details for - - 2'-5' oligoadenylate synthetase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 246728

Tuberculist Genomic Region

69721 predicted gene 8995

Details for - - predicted gene 8995

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 668139

Tuberculist Genomic Region

100040462 NFKB inhibitor interacting Ras-like protein 1

Details for RP23-205G15.2 - NFKB inhibitor interacting Ras-like protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69721

Tuberculist Genomic Region

100198 myeloid nuclear differentiation antigen like

Details for - - myeloid nuclear differentiation antigen like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100040462

Tuberculist Genomic Region

100503498 hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)

Details for RP23-169H13.3 - hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100198

Tuberculist Genomic Region

14676 predicted gene, 16675

Details for - - predicted gene, 16675

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503498

Tuberculist Genomic Region

15958 guanine nucleotide binding protein, alpha 15

Details for - - guanine nucleotide binding protein, alpha 15

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14676

Tuberculist Genomic Region

16197 interferon-induced protein with tetratricopeptide repeats 2

Details for - - interferon-induced protein with tetratricopeptide repeats 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15958

Tuberculist Genomic Region

17357 interleukin 7 receptor

Details for - - interleukin 7 receptor

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16197

Tuberculist Genomic Region

18187 MARCKS-like 1

Details for RP23-209C6.6 - MARCKS-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17357

Tuberculist Genomic Region

22146 neuropilin 2

Details for RP23-149A5.1 - neuropilin 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18187

Tuberculist Genomic Region

22323 tubulin, alpha 1C

Details for - - tubulin, alpha 1C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22146

Tuberculist Genomic Region

240327 vasodilator-stimulated phosphoprotein

Details for - - vasodilator-stimulated phosphoprotein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22323

Tuberculist Genomic Region

56066 predicted gene 4951

Details for - - predicted gene 4951

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 240327

Tuberculist Genomic Region

56501 chemokine (C-X-C motif) ligand 11

Details for - - chemokine (C-X-C motif) ligand 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56066

Tuberculist Genomic Region

60440 E74-like factor 4 (ets domain transcription factor)

Details for RP23-260P5.2 - E74-like factor 4 (ets domain transcription factor)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56501

Tuberculist Genomic Region

627049 interferon inducible GTPase 1

Details for - - interferon inducible GTPase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60440

Tuberculist Genomic Region

83490 zinc finger protein 800

Details for - - zinc finger protein 800

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 627049

Tuberculist Genomic Region

Details for - - phosphoinositide-3-kinase adaptor protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 83490

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_R_01_M00273 0.695652 0.000013

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0081 TNTCTCTTYCY 0.0016 NGAGGAAGNAG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.82 CCGCGT NA 0.97 TGAGGCGC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.73 CAACATCC NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-144 0.5 0.0000634

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