PITA_144 megaCluster: 8 Residual: 0.20

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_144 8 0.20 15 0 0.925197 0

Members

Displaying 1 - 35 of 35
13144 death-associated protein kinase 3

Details for - - death-associated protein kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13144

Tuberculist Genomic Region

14467 glioblastoma amplified sequence

Details for - - glioblastoma amplified sequence

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14467

Tuberculist Genomic Region

14894 gene trap locus 3

Details for - - gene trap locus 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14894

Tuberculist Genomic Region

195040 transmembrane protein 199

Details for RP23-399H5.5 - transmembrane protein 199

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 195040

Tuberculist Genomic Region

207474 potassium channel tetramerisation domain containing 12b

Details for RP23-106P7.1 - potassium channel tetramerisation domain containing 12b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 207474

Tuberculist Genomic Region

227619 mannosidase, alpha, class 1B, member 1

Details for RP23-47P18.1 - mannosidase, alpha, class 1B, member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227619

Tuberculist Genomic Region

320727 importin 8

Details for RP24-441E15.3 - importin 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320727

Tuberculist Genomic Region

52830 proline-rich nuclear receptor coactivator 2

Details for RP23-161N17.3 - proline-rich nuclear receptor coactivator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52830

Tuberculist Genomic Region

74741 C2 calcium-dependent domain containing 5

Details for - - C2 calcium-dependent domain containing 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74741

Tuberculist Genomic Region

100929 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

Details for - - tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100929

Tuberculist Genomic Region

106326 oxysterol binding protein-like 11

Details for - - oxysterol binding protein-like 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106326

Tuberculist Genomic Region

108682 glutamic pyruvate transaminase (alanine aminotransferase) 2

Details for - - glutamic pyruvate transaminase (alanine aminotransferase) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108682

Tuberculist Genomic Region

11518 adducin 1 (alpha)

Details for - - adducin 1 (alpha)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11518

Tuberculist Genomic Region

13185 Down syndrome critical region gene 3

Details for - - Down syndrome critical region gene 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13185

Tuberculist Genomic Region

13448 docking protein 1

Details for - - docking protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13448

Tuberculist Genomic Region

17283 multiple endocrine neoplasia 1

Details for - - multiple endocrine neoplasia 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17283

Tuberculist Genomic Region

17850 methylmalonyl-Coenzyme A mutase

Details for - - methylmalonyl-Coenzyme A mutase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17850

Tuberculist Genomic Region

20817 serine/arginine-rich protein specific kinase 2

Details for - - serine/arginine-rich protein specific kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20817

Tuberculist Genomic Region

226539 aspartyl-tRNA synthetase 2 (mitochondrial)

Details for - - aspartyl-tRNA synthetase 2 (mitochondrial)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226539

Tuberculist Genomic Region

228545 vacuolar protein sorting 18 (yeast)

Details for RP23-46P4.6 - vacuolar protein sorting 18 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228545

Tuberculist Genomic Region

230996 RIKEN cDNA 9430015G10 gene

Details for RP23-139J18.1 - RIKEN cDNA 9430015G10 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230996

Tuberculist Genomic Region

231670 F-box protein 21

Details for - - F-box protein 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231670

Tuberculist Genomic Region

239570 tetratricopeptide repeat domain 38

Details for - - tetratricopeptide repeat domain 38

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 239570

Tuberculist Genomic Region

64291 oxysterol binding protein-like 1A

Details for - - oxysterol binding protein-like 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64291

Tuberculist Genomic Region

66945 succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

Details for - - succinate dehydrogenase complex, subunit A, flavoprotein (Fp)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66945

Tuberculist Genomic Region

67150 ring finger protein 141

Details for - - ring finger protein 141

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67150

Tuberculist Genomic Region

71538 f-box protein 9

Details for MNCb-2471 - f-box protein 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71538

Tuberculist Genomic Region

71732 vacuolar protein sorting 11 (yeast)

Details for - - vacuolar protein sorting 11 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71732

Tuberculist Genomic Region

74114 carnitine O-octanoyltransferase

Details for - - carnitine O-octanoyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74114

Tuberculist Genomic Region

75415 Rho GTPase activating protein 12

Details for - - Rho GTPase activating protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75415

Tuberculist Genomic Region

76608 HECT domain containing 3

Details for RP23-419D6.4 - HECT domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76608

Tuberculist Genomic Region

76795 TBC1 domain family, member 9B

Details for RP23-319B15.5 - TBC1 domain family, member 9B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76795

Tuberculist Genomic Region

12576 cyclin-dependent kinase inhibitor 1B

Details for - - cyclin-dependent kinase inhibitor 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12576

Tuberculist Genomic Region

19687 replication factor C (activator 1) 1

Details for - - replication factor C (activator 1) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19687

Tuberculist Genomic Region

79221 histone deacetylase 9

Details for - - histone deacetylase 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 79221

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_YY1_03_M02044 0.342857 0.00000749

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.23 ATTTTTANTKT NA 220000 AAWTTTTAWAWG NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.2 GCGCCG V$E2F4_04_M02847, V$E2F2_04_M02846, E2F3.2, E2F2.2, E2F3.1, E2F2.1 1.33 CGCGCTTC NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.51 CGCCGA NA NA 0.68 AGANGTAC NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-5113 0.545455 0.0000301

Add comment

Log in or register to post comments