PITA_148 megaCluster: 8 Residual: 0.14

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_148 8 0.14 15 0 0.964799 0

Members

Displaying 1 - 23 of 23
12036 branched chain aminotransferase 2, mitochondrial

Details for - - branched chain aminotransferase 2, mitochondrial

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12036

Tuberculist Genomic Region

18861 postmeiotic segregation increased 2 (S. cerevisiae)

Details for - - postmeiotic segregation increased 2 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18861

Tuberculist Genomic Region

227333 diacylglycerol kinase, delta

Details for - - diacylglycerol kinase, delta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227333

Tuberculist Genomic Region

232196 expressed sequence C87436

Details for - - expressed sequence C87436

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232196

Tuberculist Genomic Region

66634 minichromosome maintenance deficient 8 (S. cerevisiae)

Details for RP23-77H16.3 - minichromosome maintenance deficient 8 (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66634

Tuberculist Genomic Region

69976 galactokinase 2

Details for RP23-386I21.1 - galactokinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69976

Tuberculist Genomic Region

74102 solute carrier family 35, member A5

Details for - - solute carrier family 35, member A5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74102

Tuberculist Genomic Region

12576 expressed sequence AI467606

Details for - - expressed sequence AI467606

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101602

Tuberculist Genomic Region

14651 cyclin-dependent kinase inhibitor 1B

Details for - - cyclin-dependent kinase inhibitor 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12576

Tuberculist Genomic Region

15185 hydroxyacyl glutathione hydrolase

Details for - - hydroxyacyl glutathione hydrolase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14651

Tuberculist Genomic Region

17120 histone deacetylase 6

Details for RP23-198C2.1 - histone deacetylase 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15185

Tuberculist Genomic Region

19060 MAD1 mitotic arrest deficient 1-like 1

Details for - - MAD1 mitotic arrest deficient 1-like 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17120

Tuberculist Genomic Region

19687 protein phosphatase 5, catalytic subunit

Details for - - protein phosphatase 5, catalytic subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19060

Tuberculist Genomic Region

19765 replication factor C (activator 1) 1

Details for - - replication factor C (activator 1) 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19687

Tuberculist Genomic Region

269180 ralA binding protein 1

Details for - - ralA binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19765

Tuberculist Genomic Region

641376 inositol polyphosphate-4-phosphatase, type I

Details for - - inositol polyphosphate-4-phosphatase, type I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269180

Tuberculist Genomic Region

67144 translocase of outer mitochondrial membrane 40 homolog-like (yeast)

Details for - - translocase of outer mitochondrial membrane 40 homolog-like (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 641376

Tuberculist Genomic Region

68394 leucine rich repeat containing 40

Details for - - leucine rich repeat containing 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67144

Tuberculist Genomic Region

68964 coiled-coil domain containing 163

Details for RP23-109A3.1 - coiled-coil domain containing 163

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68394

Tuberculist Genomic Region

69069 CTS telomere maintenance complex component 1

Details for RP23-19I2.2 - CTS telomere maintenance complex component 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68964

Tuberculist Genomic Region

74412 RIKEN cDNA 1810011H11 gene

Details for - - RIKEN cDNA 1810011H11 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69069

Tuberculist Genomic Region

208194 GLE1 RNA export mediator (yeast)

Details for RP23-443G7.5 - GLE1 RNA export mediator (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74412

Tuberculist Genomic Region

Details for - - endo/exonuclease (5'-3'), endonuclease G-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208194

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Klf7.2 0.304348 0.0000187

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.21 TTTRTTTTNTTT NA 13000 TTCTGATTGGCT NFYA_MA0060.1, V$NFY_C_M00209, V$ALPHACP1_01_M00687, V$NFYA_Q5_M02106, V$NFYC_Q5_M02107, V$NFY_01_M00287

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.24 CGCCGT NA 1.41 ACGTCGGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.68 ACAGCN NA NA 0.85 CNCGTCAT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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