PITA_149 megaCluster: 3 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_149 3 0.18 9 0 0.774813 0.071

Members

Displaying 1 - 25 of 25
121021 chondroitin sulfate proteoglycan 4

Details for - - chondroitin sulfate proteoglycan 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 121021

Tuberculist Genomic Region

17909 myosin X

Details for - - myosin X

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17909

Tuberculist Genomic Region

17937 Ngfi-A binding protein 2

Details for - - Ngfi-A binding protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17937

Tuberculist Genomic Region

23921 SH2B adaptor protein 2

Details for - - SH2B adaptor protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23921

Tuberculist Genomic Region

71409 formin-like 2

Details for RP23-282A22.1 - formin-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71409

Tuberculist Genomic Region

16176 CDC42 effector protein (Rho GTPase binding) 2

Details for - - CDC42 effector protein (Rho GTPase binding) 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 104252

Tuberculist Genomic Region

17750 interleukin 1 beta

Details for RP23-384K11.2 - interleukin 1 beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16176

Tuberculist Genomic Region

17872 metallothionein 2

Details for - - metallothionein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17750

Tuberculist Genomic Region

18550 protein phosphatase 1, regulatory (inhibitor) subunit 15A

Details for - - protein phosphatase 1, regulatory (inhibitor) subunit 15A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17872

Tuberculist Genomic Region

20592 furin (paired basic amino acid cleaving enzyme)

Details for - - furin (paired basic amino acid cleaving enzyme)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18550

Tuberculist Genomic Region

208647 lysine (K)-specific demethylase 5D

Details for - - lysine (K)-specific demethylase 5D

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20592

Tuberculist Genomic Region

216799 cAMP responsive element binding protein 3-like 2

Details for - - cAMP responsive element binding protein 3-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208647

Tuberculist Genomic Region

21815 NLR family, pyrin domain containing 3

Details for RP23-210M6.4 - NLR family, pyrin domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216799

Tuberculist Genomic Region

234839 TGFB-induced factor homeobox 1

Details for - - TGFB-induced factor homeobox 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21815

Tuberculist Genomic Region

24056 piezo-type mechanosensitive ion channel component 1

Details for - - piezo-type mechanosensitive ion channel component 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234839

Tuberculist Genomic Region

26908 SH3-domain binding protein 5 (BTK-associated)

Details for - - SH3-domain binding protein 5 (BTK-associated)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 24056

Tuberculist Genomic Region

381290 eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked

Details for - - eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26908

Tuberculist Genomic Region

383435 ATPase, Ca++ transporting, plasma membrane 4

Details for - - ATPase, Ca++ transporting, plasma membrane 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 381290

Tuberculist Genomic Region

67197 membrane-spanning 4-domains, subfamily A, member 14

Details for - - membrane-spanning 4-domains, subfamily A, member 14

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 383435

Tuberculist Genomic Region

67702 zinc finger CCHC-type and RNA binding motif 1

Details for - - zinc finger CCHC-type and RNA binding motif 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67197

Tuberculist Genomic Region

73178 ring finger protein 149

Details for - - ring finger protein 149

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67702

Tuberculist Genomic Region

73998 Wiskott-Aldrich syndrome-like (human)

Details for - - Wiskott-Aldrich syndrome-like (human)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73178

Tuberculist Genomic Region

75956 hect domain and RLD 3

Details for - - hect domain and RLD 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73998

Tuberculist Genomic Region

80885 serine/arginine repetitive matrix 2

Details for - - serine/arginine repetitive matrix 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75956

Tuberculist Genomic Region

Details for - - niacin receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80885

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_AR_03_M00956 0.416667 0.0000213

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.11 WTAAAAGAAAW NA 1500 TTTTGTTTTTTW V$FOXP1_01_M00987

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.16 ACGCGA NA 1.2 TCCGCGCA Zfp161.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.59 GCCCRC NA NA 0.85 TAGCCCGC mmu-mir-6538 7mer_a1

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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