PITA_150 megaCluster: 8 Residual: 0.13

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_150 8 0.13 15 0 0.967105 0

Members

Displaying 1 - 23 of 23
17535 meiotic recombination 11 homolog A (S. cerevisiae)

Details for RP23-149D5.3 - meiotic recombination 11 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17535

Tuberculist Genomic Region

17688 mutS homolog 6 (E. coli)

Details for - - mutS homolog 6 (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17688

Tuberculist Genomic Region

19075 DNA primase, p49 subunit

Details for - - DNA primase, p49 subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19075

Tuberculist Genomic Region

230376 HAUS augmin-like complex, subunit 6

Details for RP23-95O1.3 - HAUS augmin-like complex, subunit 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 230376

Tuberculist Genomic Region

236266 Alstrom syndrome 1

Details for - - Alstrom syndrome 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236266

Tuberculist Genomic Region

236790 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

Details for - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236790

Tuberculist Genomic Region

50883 checkpoint kinase 2

Details for - - checkpoint kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50883

Tuberculist Genomic Region

52504 centromere protein O

Details for RP23-6C18.1 - centromere protein O

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52504

Tuberculist Genomic Region

56196 tyrosyl-DNA phosphodiesterase 2

Details for RP23-92G13.1 - tyrosyl-DNA phosphodiesterase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56196

Tuberculist Genomic Region

56459 SUMO1 activating enzyme subunit 1

Details for - - SUMO1 activating enzyme subunit 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56459

Tuberculist Genomic Region

68201 coiled-coil domain containing 34

Details for RP23-300M9.1 - coiled-coil domain containing 34

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68201

Tuberculist Genomic Region

70099 structural maintenance of chromosomes 4

Details for - - structural maintenance of chromosomes 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70099

Tuberculist Genomic Region

75735 pantothenate kinase 1

Details for - - pantothenate kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75735

Tuberculist Genomic Region

16319 inner centromere protein

Details for - - inner centromere protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16319

Tuberculist Genomic Region

16558 kinesin family member 16B

Details for RP23-442B16.1 - kinesin family member 16B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16558

Tuberculist Genomic Region

16987 lanosterol synthase

Details for - - lanosterol synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16987

Tuberculist Genomic Region

211586 transcription factor Dp 2

Details for - - transcription factor Dp 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211586

Tuberculist Genomic Region

21749 telomeric repeat binding factor 1

Details for - - telomeric repeat binding factor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21749

Tuberculist Genomic Region

227333 diacylglycerol kinase, delta

Details for - - diacylglycerol kinase, delta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227333

Tuberculist Genomic Region

232196 expressed sequence C87436

Details for - - expressed sequence C87436

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 232196

Tuberculist Genomic Region

269254 senataxin

Details for RP23-426D2.7 - senataxin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269254

Tuberculist Genomic Region

66578 MIS18 kinetochore protein homolog A (S. pombe)

Details for - - MIS18 kinetochore protein homolog A (S. pombe)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66578

Tuberculist Genomic Region

71085 Rho GTPase activating protein 19

Details for - - Rho GTPase activating protein 19

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71085

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IK_Q5_M01169 0.73913 0.0000685

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000094 TTNSTTTTTTCY NA 1400 CGCGCCTKCGC V$ZFP206_01_M01742, NRF1_NRF_full_dimeric_12_1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.32 CGAACG NA 1.47 NAGGCGCG V$E2F_Q2_M00803, E2F2.1, Sp4.2, E2F3.1, Bcl6b.2, Zfp161.1, Smad3.1, Zfp410.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.59 GAANGT NA NA 0.76 GTTTGTTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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