PITA_155 megaCluster: 10 Residual: 0.24

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_155 10 0.24 14 0 0.854367 0

Members

Displaying 1 - 22 of 22
12846 catechol-O-methyltransferase

Details for - - catechol-O-methyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12846

Tuberculist Genomic Region

16551 kinesin family member 11

Details for - - kinesin family member 11

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16551

Tuberculist Genomic Region

213056 family with sequence similarity 126, member B

Details for - - family with sequence similarity 126, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213056

Tuberculist Genomic Region

68058 chromodomain helicase DNA binding protein 1-like

Details for - - chromodomain helicase DNA binding protein 1-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68058

Tuberculist Genomic Region

68259 intraflagellar transport 80

Details for - - intraflagellar transport 80

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68259

Tuberculist Genomic Region

102920 centromere protein I

Details for RP23-162B19.4 - centromere protein I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 102920

Tuberculist Genomic Region

170762 nucleoporin 155

Details for - - nucleoporin 155

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170762

Tuberculist Genomic Region

170936 zinc finger protein 369

Details for - - zinc finger protein 369

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 170936

Tuberculist Genomic Region

17533 mannose receptor, C type 1

Details for - - mannose receptor, C type 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17533

Tuberculist Genomic Region

17535 meiotic recombination 11 homolog A (S. cerevisiae)

Details for RP23-149D5.3 - meiotic recombination 11 homolog A (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17535

Tuberculist Genomic Region

17692 male-specific lethal 3 homolog (Drosophila)

Details for RP23-125I7.1 - male-specific lethal 3 homolog (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17692

Tuberculist Genomic Region

21973 topoisomerase (DNA) II alpha

Details for RP23-333D2.5 - topoisomerase (DNA) II alpha

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21973

Tuberculist Genomic Region

224088 ATPase type 13A3

Details for - - ATPase type 13A3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224088

Tuberculist Genomic Region

233406 protein regulator of cytokinesis 1

Details for - - protein regulator of cytokinesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 233406

Tuberculist Genomic Region

236790 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

Details for - - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 236790

Tuberculist Genomic Region

238831 peptidylprolyl isomerase domain and WD repeat containing 1

Details for - - peptidylprolyl isomerase domain and WD repeat containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 238831

Tuberculist Genomic Region

56224 tetraspanin 5

Details for - - tetraspanin 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56224

Tuberculist Genomic Region

57320 Parkinson disease (autosomal recessive, early onset) 7

Details for RP23-272N19.5 - Parkinson disease (autosomal recessive, early onset) 7

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57320

Tuberculist Genomic Region

67036 mitochondrial ribosomal protein L45

Details for RP23-157O10.1 - mitochondrial ribosomal protein L45

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67036

Tuberculist Genomic Region

70099 structural maintenance of chromosomes 4

Details for - - structural maintenance of chromosomes 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70099

Tuberculist Genomic Region

84505 SET domain, bifurcated 1

Details for - - SET domain, bifurcated 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 84505

Tuberculist Genomic Region

105670 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2

Details for - - regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105670

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_ER81_01_M01987 0.409091 0.0000063

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00001 AAAAAAACAAAA NA 400 GNAGAAANNGAT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.28 CGCGNG NA 1.65 NCGCGCGY Zfp161.1, E2F2.1, E2F3.1, Zfp161.2

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.88 CTAGTA NA NA 1.02 CTAGTAGA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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