PITA_158 megaCluster: 1 Residual: 0.17 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
PITA_158	1	0.17	15	0.055	0.946146	0

Members

Displaying 1 - 19 of 19

12984 colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage) Details for - - colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12984 Tuberculist Genomic Region	16491 potassium voltage-gated channel, shaker-related subfamily, member 3 Details for - - potassium voltage-gated channel, shaker-related subfamily, member 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16491 Tuberculist Genomic Region
229898 guanylate binding protein 5 Details for - - guanylate binding protein 5 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229898 Tuberculist Genomic Region	387173 microRNA 155 Details for - - microRNA 155 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 387173 Tuberculist Genomic Region
100504230 expressed sequence AU020206 Details for - - expressed sequence AU020206 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504230 Tuberculist Genomic Region	14571 glycerol phosphate dehydrogenase 2, mitochondrial Details for - - glycerol phosphate dehydrogenase 2, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 14571 Tuberculist Genomic Region
16175 interleukin 1 alpha Details for RP23-160G19.8 - interleukin 1 alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 16175 Tuberculist Genomic Region	17131 SMAD family member 7 Details for - - SMAD family member 7 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17131 Tuberculist Genomic Region
17858 myxovirus (influenza virus) resistance 2 Details for - - myxovirus (influenza virus) resistance 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 17858 Tuberculist Genomic Region	18035 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18035 Tuberculist Genomic Region
19157 cytohesin 1 Details for RP23-28C17.3 - cytohesin 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 19157 Tuberculist Genomic Region	21817 transglutaminase 2, C polypeptide Details for RP23-396G1.2 - transglutaminase 2, C polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 21817 Tuberculist Genomic Region
229694 expressed sequence AI504432 Details for - - expressed sequence AI504432 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229694 Tuberculist Genomic Region	23882 growth arrest and DNA-damage-inducible 45 gamma Details for - - growth arrest and DNA-damage-inducible 45 gamma GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 23882 Tuberculist Genomic Region
29810 BCL2-associated athanogene 3 Details for MNCb-2243 - BCL2-associated athanogene 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 29810 Tuberculist Genomic Region	54199 chemokine (C-C motif) receptor-like 2 Details for - - chemokine (C-C motif) receptor-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 54199 Tuberculist Genomic Region
68732 leucine rich repeat containing 16A Details for RP23-462P2.7 - leucine rich repeat containing 16A GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68732 Tuberculist Genomic Region	72580 zinc finger with UFM1-specific peptidase domain Details for - - zinc finger with UFM1-specific peptidase domain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72580 Tuberculist Genomic Region
74646 splA/ryanodine receptor domain and SOCS box containing 1 Details for RP23-169H13.1 - splA/ryanodine receptor domain and SOCS box containing 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74646 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_ISGF3G_03_M02771	0.5	0.000000000286

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.045	RARAAGARAAAG	NA	1400	AGGCTNTKNCT	NA

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.13	CGCTGG	NA	1.37	GCCAGCGN	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.93	CGCTCG	NA	NA	1.07	GGGNGGNG	mmu-mir-1900	7mer_a1

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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